miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 5' -52.8 NC_001798.1 + 104178 0.72 0.747702
Target:  5'- gGCAca--GGGcGGCCAGCCCCGGAaACa -3'
miRNA:   3'- -CGUuauaCCC-UUGGUCGGGGUCUgUG- -5'
5123 5' -52.8 NC_001798.1 + 101949 0.74 0.644451
Target:  5'- -gGGUggGGGGACC-GCCCCGGAUAg -3'
miRNA:   3'- cgUUAuaCCCUUGGuCGGGGUCUGUg -5'
5123 5' -52.8 NC_001798.1 + 97693 0.68 0.924714
Target:  5'- aGCGGUcgcu-GGCCAGCCUCGGGCGCu -3'
miRNA:   3'- -CGUUAuacccUUGGUCGGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 97569 0.76 0.538961
Target:  5'- aGCGAggacgGGGAGCgCGGCCCCgagccagGGGCGCa -3'
miRNA:   3'- -CGUUaua--CCCUUG-GUCGGGG-------UCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 97487 0.71 0.79592
Target:  5'- cGCGAccggGGGGGCCgaggaggaagAGCCCCGGGC-Cg -3'
miRNA:   3'- -CGUUaua-CCCUUGG----------UCGGGGUCUGuG- -5'
5123 5' -52.8 NC_001798.1 + 96445 0.66 0.976568
Target:  5'- cGCGAg--GGGGAgCGGCuCCUGGGcCACc -3'
miRNA:   3'- -CGUUauaCCCUUgGUCG-GGGUCU-GUG- -5'
5123 5' -52.8 NC_001798.1 + 94582 0.67 0.949451
Target:  5'- ------cGGGucGCCAGCCuCCAGAgCGCc -3'
miRNA:   3'- cguuauaCCCu-UGGUCGG-GGUCU-GUG- -5'
5123 5' -52.8 NC_001798.1 + 91805 0.66 0.964818
Target:  5'- cGCGGggcGUGGGGACCgugggcggGGCCC--GACGCc -3'
miRNA:   3'- -CGUUa--UACCCUUGG--------UCGGGguCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 90810 0.7 0.848521
Target:  5'- cGCGAUGgcuucGGGggUCAGaCCCAGAaGCg -3'
miRNA:   3'- -CGUUAUa----CCCuuGGUCgGGGUCUgUG- -5'
5123 5' -52.8 NC_001798.1 + 90084 0.66 0.976568
Target:  5'- ------cGGGGGCCggcaGGCCCCuGGAgGCg -3'
miRNA:   3'- cguuauaCCCUUGG----UCGGGG-UCUgUG- -5'
5123 5' -52.8 NC_001798.1 + 87927 0.66 0.97112
Target:  5'- gGCGAUGgcguacccGGGAuccuccGCCAG-CUCGGACACc -3'
miRNA:   3'- -CGUUAUa-------CCCU------UGGUCgGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 86075 0.67 0.953651
Target:  5'- cGCcGUcUGGGAGUCggGGCCCCGGcuGCGCg -3'
miRNA:   3'- -CGuUAuACCCUUGG--UCGGGGUC--UGUG- -5'
5123 5' -52.8 NC_001798.1 + 84965 0.66 0.973947
Target:  5'- cGCAGUcgGGG-AUCGcGUCCCguaacguucgcGGACGCg -3'
miRNA:   3'- -CGUUAuaCCCuUGGU-CGGGG-----------UCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 80997 0.7 0.847701
Target:  5'- cGCGGUcuuGUGGGAAgccccggagccccCCGGCCCCccuGACGu -3'
miRNA:   3'- -CGUUA---UACCCUU-------------GGUCGGGGu--CUGUg -5'
5123 5' -52.8 NC_001798.1 + 77572 0.66 0.973947
Target:  5'- ------cGGGGACCAuucCCCCAGcggGCGCg -3'
miRNA:   3'- cguuauaCCCUUGGUc--GGGGUC---UGUG- -5'
5123 5' -52.8 NC_001798.1 + 76989 0.68 0.930166
Target:  5'- gGCAGUAccGGGAggcccuggaacACCcGaCCCCGGAUACc -3'
miRNA:   3'- -CGUUAUa-CCCU-----------UGGuC-GGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 76342 0.7 0.856606
Target:  5'- ------aGcGGGGCCAGCCCCuAGAUGCc -3'
miRNA:   3'- cguuauaC-CCUUGGUCGGGG-UCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 74874 0.66 0.973947
Target:  5'- gGCAGUGccGGuGggUC-GCCaCCGGGCGCg -3'
miRNA:   3'- -CGUUAUa-CC-CuuGGuCGG-GGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 74731 0.71 0.79499
Target:  5'- aGCAGcccUGgagGGGAccccgcccgcgaaGCCcucGGCCCCGGACGCc -3'
miRNA:   3'- -CGUU---AUa--CCCU-------------UGG---UCGGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 72762 0.66 0.96808
Target:  5'- --uGUcgGGGGACCAGguCCCCGGGu-- -3'
miRNA:   3'- cguUAuaCCCUUGGUC--GGGGUCUgug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.