miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 5' -52.8 NC_001798.1 + 153678 0.66 0.973674
Target:  5'- cGCGGgcgGGGAcgcgggggccgccGCCGGCgcaggCUCAGGCGCg -3'
miRNA:   3'- -CGUUauaCCCU-------------UGGUCG-----GGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 152625 0.68 0.930166
Target:  5'- cGCAG-AUGGGAGuCCccccggcGCCCCGccGGCGCg -3'
miRNA:   3'- -CGUUaUACCCUU-GGu------CGGGGU--CUGUG- -5'
5123 5' -52.8 NC_001798.1 + 152091 0.66 0.97112
Target:  5'- aGCGGgccGGGggUCGGCCCCGucaaGCg -3'
miRNA:   3'- -CGUUauaCCCuuGGUCGGGGUcug-UG- -5'
5123 5' -52.8 NC_001798.1 + 149750 0.67 0.942218
Target:  5'- cGCGGgggccgaGGGAGguuucucgucucuccCCAGCgCCGGACGCg -3'
miRNA:   3'- -CGUUaua----CCCUU---------------GGUCGgGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 147237 0.71 0.831734
Target:  5'- ------cGGGGGCCccggGGCCCCGGGcCGCg -3'
miRNA:   3'- cguuauaCCCUUGG----UCGGGGUCU-GUG- -5'
5123 5' -52.8 NC_001798.1 + 146432 0.68 0.924714
Target:  5'- gGCAGaGUGcGGAGCCcccggAGCCCgCGGcCGCa -3'
miRNA:   3'- -CGUUaUAC-CCUUGG-----UCGGG-GUCuGUG- -5'
5123 5' -52.8 NC_001798.1 + 143461 0.66 0.976568
Target:  5'- -----cUGGGGugcaaacguCCAGCCCCAcGAgGCa -3'
miRNA:   3'- cguuauACCCUu--------GGUCGGGGU-CUgUG- -5'
5123 5' -52.8 NC_001798.1 + 138840 1.13 0.002824
Target:  5'- cGCAAUAUGGGAACCAGCCCCAGACACg -3'
miRNA:   3'- -CGUUAUACCCUUGGUCGGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 138578 0.71 0.805132
Target:  5'- aCAGgg-GGGGGCaCAGCaCCAGGCACu -3'
miRNA:   3'- cGUUauaCCCUUG-GUCGgGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 134978 0.67 0.953651
Target:  5'- cGCGugccUGGGGGCCuGGCCCgCGGugGg -3'
miRNA:   3'- -CGUuau-ACCCUUGG-UCGGG-GUCugUg -5'
5123 5' -52.8 NC_001798.1 + 132149 0.7 0.84357
Target:  5'- ------cGGGGGCCGGCgggcggggcgcccccCCCGGACGCc -3'
miRNA:   3'- cguuauaCCCUUGGUCG---------------GGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 127924 0.69 0.900383
Target:  5'- ----cGUGGGcAACCcgacggcggGGCCCCGGGCGa -3'
miRNA:   3'- cguuaUACCC-UUGG---------UCGGGGUCUGUg -5'
5123 5' -52.8 NC_001798.1 + 124717 0.67 0.949451
Target:  5'- ------cGGGAcgagccaaACCAGCCCCgcAGGCAg -3'
miRNA:   3'- cguuauaCCCU--------UGGUCGGGG--UCUGUg -5'
5123 5' -52.8 NC_001798.1 + 123409 0.67 0.949451
Target:  5'- ------cGGGAGCCgcGGCCCCgccgggucaccgGGGCGCc -3'
miRNA:   3'- cguuauaCCCUUGG--UCGGGG------------UCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 122759 0.72 0.747702
Target:  5'- ------aGGGGACC-GCCCCcGACGCg -3'
miRNA:   3'- cguuauaCCCUUGGuCGGGGuCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 120196 0.68 0.930166
Target:  5'- cGCAGUGauagaaGaGGAGCUcgGGCCCCGGGC-Cg -3'
miRNA:   3'- -CGUUAUa-----C-CCUUGG--UCGGGGUCUGuG- -5'
5123 5' -52.8 NC_001798.1 + 111535 0.66 0.976568
Target:  5'- ----cGUGGGGcuccuCCAGCgCCCGGuCGCc -3'
miRNA:   3'- cguuaUACCCUu----GGUCG-GGGUCuGUG- -5'
5123 5' -52.8 NC_001798.1 + 109026 0.7 0.840228
Target:  5'- cGCGGUGcuccccGGGccuccGGCCGGCCCCAGGuauCGCg -3'
miRNA:   3'- -CGUUAUa-----CCC-----UUGGUCGGGGUCU---GUG- -5'
5123 5' -52.8 NC_001798.1 + 106990 0.7 0.864476
Target:  5'- gGCGGcgGUGGuaauGACCAGCgCCCAGAUAa -3'
miRNA:   3'- -CGUUa-UACCc---UUGGUCG-GGGUCUGUg -5'
5123 5' -52.8 NC_001798.1 + 106469 0.67 0.95761
Target:  5'- uGCAGUcUGGGcGGCgCGGCCCgAGGucCACu -3'
miRNA:   3'- -CGUUAuACCC-UUG-GUCGGGgUCU--GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.