miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 5' -52.8 NC_001798.1 + 138840 1.13 0.002824
Target:  5'- cGCAAUAUGGGAACCAGCCCCAGACACg -3'
miRNA:   3'- -CGUUAUACCCUUGGUCGGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 3899 0.8 0.338628
Target:  5'- ------gGGGGGCCGGCCCCGGGcCACg -3'
miRNA:   3'- cguuauaCCCUUGGUCGGGGUCU-GUG- -5'
5123 5' -52.8 NC_001798.1 + 15358 0.77 0.499636
Target:  5'- gGCGGUGagggGGGAAUCGGCCgUGGGCGCg -3'
miRNA:   3'- -CGUUAUa---CCCUUGGUCGGgGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 97569 0.76 0.538961
Target:  5'- aGCGAggacgGGGAGCgCGGCCCCgagccagGGGCGCa -3'
miRNA:   3'- -CGUUaua--CCCUUG-GUCGGGG-------UCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 3022 0.75 0.623375
Target:  5'- gGCGGgccGGGcuccGGCCAGCCCCGG-CACg -3'
miRNA:   3'- -CGUUauaCCC----UUGGUCGGGGUCuGUG- -5'
5123 5' -52.8 NC_001798.1 + 43020 0.75 0.623375
Target:  5'- cGCccgggGGGAGCgCggGGCCCCGGGCGCa -3'
miRNA:   3'- -CGuuauaCCCUUG-G--UCGGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 101949 0.74 0.644451
Target:  5'- -gGGUggGGGGACC-GCCCCGGAUAg -3'
miRNA:   3'- cgUUAuaCCCUUGGuCGGGGUCUGUg -5'
5123 5' -52.8 NC_001798.1 + 42698 0.73 0.727593
Target:  5'- gGC-GUcgGGGAACCAGUCCCcGuCGCc -3'
miRNA:   3'- -CGuUAuaCCCUUGGUCGGGGuCuGUG- -5'
5123 5' -52.8 NC_001798.1 + 104178 0.72 0.747702
Target:  5'- gGCAca--GGGcGGCCAGCCCCGGAaACa -3'
miRNA:   3'- -CGUuauaCCC-UUGGUCGGGGUCUgUG- -5'
5123 5' -52.8 NC_001798.1 + 122759 0.72 0.747702
Target:  5'- ------aGGGGACC-GCCCCcGACGCg -3'
miRNA:   3'- cguuauaCCCUUGGuCGGGGuCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 2095 0.72 0.777035
Target:  5'- cCGGg--GGGGGCCcGCCCCcGGCGCg -3'
miRNA:   3'- cGUUauaCCCUUGGuCGGGGuCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 64101 0.72 0.777035
Target:  5'- cGgAAUcgGGGccgccCCGGCCCCcGACGCg -3'
miRNA:   3'- -CgUUAuaCCCuu---GGUCGGGGuCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 2979 0.71 0.786551
Target:  5'- uGCGGcg-GGGcGGCCggcccgcgGGCCCCGGGCGCg -3'
miRNA:   3'- -CGUUauaCCC-UUGG--------UCGGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 74731 0.71 0.79499
Target:  5'- aGCAGcccUGgagGGGAccccgcccgcgaaGCCcucGGCCCCGGACGCc -3'
miRNA:   3'- -CGUU---AUa--CCCU-------------UGG---UCGGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 97487 0.71 0.79592
Target:  5'- cGCGAccggGGGGGCCgaggaggaagAGCCCCGGGC-Cg -3'
miRNA:   3'- -CGUUaua-CCCUUGG----------UCGGGGUCUGuG- -5'
5123 5' -52.8 NC_001798.1 + 35396 0.71 0.79592
Target:  5'- ----cGUGGG-GCCGGCCgCCGGAUGCc -3'
miRNA:   3'- cguuaUACCCuUGGUCGG-GGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 138578 0.71 0.805132
Target:  5'- aCAGgg-GGGGGCaCAGCaCCAGGCACu -3'
miRNA:   3'- cGUUauaCCCUUG-GUCGgGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 23803 0.71 0.831734
Target:  5'- aGCcGUGgcccGGGGCCGGCCCCccgcccccgGGGCGCg -3'
miRNA:   3'- -CGuUAUac--CCUUGGUCGGGG---------UCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 147237 0.71 0.831734
Target:  5'- ------cGGGGGCCccggGGCCCCGGGcCGCg -3'
miRNA:   3'- cguuauaCCCUUGG----UCGGGGUCU-GUG- -5'
5123 5' -52.8 NC_001798.1 + 109026 0.7 0.840228
Target:  5'- cGCGGUGcuccccGGGccuccGGCCGGCCCCAGGuauCGCg -3'
miRNA:   3'- -CGUUAUa-----CCC-----UUGGUCGGGGUCU---GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.