miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 5' -52.8 NC_001798.1 + 138840 1.13 0.002824
Target:  5'- cGCAAUAUGGGAACCAGCCCCAGACACg -3'
miRNA:   3'- -CGUUAUACCCUUGGUCGGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 68982 0.66 0.970826
Target:  5'- cGUGAUGUGGGcccgGACC-GCCUCGGcggcgucGCGCg -3'
miRNA:   3'- -CGUUAUACCC----UUGGuCGGGGUC-------UGUG- -5'
5123 5' -52.8 NC_001798.1 + 72762 0.66 0.96808
Target:  5'- --uGUcgGGGGACCAGguCCCCGGGu-- -3'
miRNA:   3'- cguUAuaCCCUUGGUC--GGGGUCUgug -5'
5123 5' -52.8 NC_001798.1 + 91805 0.66 0.964818
Target:  5'- cGCGGggcGUGGGGACCgugggcggGGCCC--GACGCc -3'
miRNA:   3'- -CGUUa--UACCCUUGG--------UCGGGguCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 59521 0.67 0.96133
Target:  5'- aGCcGUAUGGGggUCuuuggGGaCCCCGGAagGCg -3'
miRNA:   3'- -CGuUAUACCCuuGG-----UC-GGGGUCUg-UG- -5'
5123 5' -52.8 NC_001798.1 + 2535 0.67 0.95761
Target:  5'- gGCGGggcgGGGGGCgCGGCCCCcgcgggAGGgGCg -3'
miRNA:   3'- -CGUUaua-CCCUUG-GUCGGGG------UCUgUG- -5'
5123 5' -52.8 NC_001798.1 + 106469 0.67 0.95761
Target:  5'- uGCAGUcUGGGcGGCgCGGCCCgAGGucCACu -3'
miRNA:   3'- -CGUUAuACCC-UUG-GUCGGGgUCU--GUG- -5'
5123 5' -52.8 NC_001798.1 + 17613 0.67 0.95761
Target:  5'- cGCAGUGauacuUGGGGaggACCAGacacgugaCCCCAGAaACg -3'
miRNA:   3'- -CGUUAU-----ACCCU---UGGUC--------GGGGUCUgUG- -5'
5123 5' -52.8 NC_001798.1 + 134978 0.67 0.953651
Target:  5'- cGCGugccUGGGGGCCuGGCCCgCGGugGg -3'
miRNA:   3'- -CGUuau-ACCCUUGG-UCGGG-GUCugUg -5'
5123 5' -52.8 NC_001798.1 + 87927 0.66 0.97112
Target:  5'- gGCGAUGgcguacccGGGAuccuccGCCAG-CUCGGACACc -3'
miRNA:   3'- -CGUUAUa-------CCCU------UGGUCgGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 152091 0.66 0.97112
Target:  5'- aGCGGgccGGGggUCGGCCCCGucaaGCg -3'
miRNA:   3'- -CGUUauaCCCuuGGUCGGGGUcug-UG- -5'
5123 5' -52.8 NC_001798.1 + 19913 0.66 0.97112
Target:  5'- cCAGggcUGGGAGCCcuCCUCGGACGu -3'
miRNA:   3'- cGUUau-ACCCUUGGucGGGGUCUGUg -5'
5123 5' -52.8 NC_001798.1 + 90084 0.66 0.976568
Target:  5'- ------cGGGGGCCggcaGGCCCCuGGAgGCg -3'
miRNA:   3'- cguuauaCCCUUGG----UCGGGG-UCUgUG- -5'
5123 5' -52.8 NC_001798.1 + 9777 0.66 0.976568
Target:  5'- cGCGGUgcugAUGGucAugUGGCCCCAGGCGu -3'
miRNA:   3'- -CGUUA----UACCc-UugGUCGGGGUCUGUg -5'
5123 5' -52.8 NC_001798.1 + 143461 0.66 0.976568
Target:  5'- -----cUGGGGugcaaacguCCAGCCCCAcGAgGCa -3'
miRNA:   3'- cguuauACCCUu--------GGUCGGGGU-CUgUG- -5'
5123 5' -52.8 NC_001798.1 + 111535 0.66 0.976568
Target:  5'- ----cGUGGGGcuccuCCAGCgCCCGGuCGCc -3'
miRNA:   3'- cguuaUACCCUu----GGUCG-GGGUCuGUG- -5'
5123 5' -52.8 NC_001798.1 + 84965 0.66 0.973947
Target:  5'- cGCAGUcgGGG-AUCGcGUCCCguaacguucgcGGACGCg -3'
miRNA:   3'- -CGUUAuaCCCuUGGU-CGGGG-----------UCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 77572 0.66 0.973947
Target:  5'- ------cGGGGACCAuucCCCCAGcggGCGCg -3'
miRNA:   3'- cguuauaCCCUUGGUc--GGGGUC---UGUG- -5'
5123 5' -52.8 NC_001798.1 + 74874 0.66 0.973947
Target:  5'- gGCAGUGccGGuGggUC-GCCaCCGGGCGCg -3'
miRNA:   3'- -CGUUAUa-CC-CuuGGuCGG-GGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 153678 0.66 0.973674
Target:  5'- cGCGGgcgGGGAcgcgggggccgccGCCGGCgcaggCUCAGGCGCg -3'
miRNA:   3'- -CGUUauaCCCU-------------UGGUCG-----GGGUCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.