miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 5' -52.8 NC_001798.1 + 2095 0.72 0.777035
Target:  5'- cCGGg--GGGGGCCcGCCCCcGGCGCg -3'
miRNA:   3'- cGUUauaCCCUUGGuCGGGGuCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 2535 0.67 0.95761
Target:  5'- gGCGGggcgGGGGGCgCGGCCCCcgcgggAGGgGCg -3'
miRNA:   3'- -CGUUaua-CCCUUG-GUCGGGG------UCUgUG- -5'
5123 5' -52.8 NC_001798.1 + 2979 0.71 0.786551
Target:  5'- uGCGGcg-GGGcGGCCggcccgcgGGCCCCGGGCGCg -3'
miRNA:   3'- -CGUUauaCCC-UUGG--------UCGGGGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 3022 0.75 0.623375
Target:  5'- gGCGGgccGGGcuccGGCCAGCCCCGG-CACg -3'
miRNA:   3'- -CGUUauaCCC----UUGGUCGGGGUCuGUG- -5'
5123 5' -52.8 NC_001798.1 + 3899 0.8 0.338628
Target:  5'- ------gGGGGGCCGGCCCCGGGcCACg -3'
miRNA:   3'- cguuauaCCCUUGGUCGGGGUCU-GUG- -5'
5123 5' -52.8 NC_001798.1 + 9777 0.66 0.976568
Target:  5'- cGCGGUgcugAUGGucAugUGGCCCCAGGCGu -3'
miRNA:   3'- -CGUUA----UACCc-UugGUCGGGGUCUGUg -5'
5123 5' -52.8 NC_001798.1 + 15038 0.7 0.848521
Target:  5'- gGCGGgagcGUGGGGcggAUgGGCCCgGGGCGCg -3'
miRNA:   3'- -CGUUa---UACCCU---UGgUCGGGgUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 15358 0.77 0.499636
Target:  5'- gGCGGUGagggGGGAAUCGGCCgUGGGCGCg -3'
miRNA:   3'- -CGUUAUa---CCCUUGGUCGGgGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 15906 0.68 0.934856
Target:  5'- gGCGggGUGGGAagggggcguacggACCgucaucuagGGCCCCGGGgGCc -3'
miRNA:   3'- -CGUuaUACCCU-------------UGG---------UCGGGGUCUgUG- -5'
5123 5' -52.8 NC_001798.1 + 17613 0.67 0.95761
Target:  5'- cGCAGUGauacuUGGGGaggACCAGacacgugaCCCCAGAaACg -3'
miRNA:   3'- -CGUUAU-----ACCCU---UGGUC--------GGGGUCUgUG- -5'
5123 5' -52.8 NC_001798.1 + 19913 0.66 0.97112
Target:  5'- cCAGggcUGGGAGCCcuCCUCGGACGu -3'
miRNA:   3'- cGUUau-ACCCUUGGucGGGGUCUGUg -5'
5123 5' -52.8 NC_001798.1 + 21829 0.69 0.879544
Target:  5'- ------cGGGAugacGCgGGCCCCGGGCAg -3'
miRNA:   3'- cguuauaCCCU----UGgUCGGGGUCUGUg -5'
5123 5' -52.8 NC_001798.1 + 21966 0.69 0.879544
Target:  5'- ------cGGGAugacGCgGGCCCCGGGCAg -3'
miRNA:   3'- cguuauaCCCU----UGgUCGGGGUCUGUg -5'
5123 5' -52.8 NC_001798.1 + 23803 0.71 0.831734
Target:  5'- aGCcGUGgcccGGGGCCGGCCCCccgcccccgGGGCGCg -3'
miRNA:   3'- -CGuUAUac--CCUUGGUCGGGG---------UCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 27254 0.68 0.919009
Target:  5'- gGCGGccgcGGGAcCgCAGCCCCGuGGCGCg -3'
miRNA:   3'- -CGUUaua-CCCUuG-GUCGGGGU-CUGUG- -5'
5123 5' -52.8 NC_001798.1 + 27529 0.67 0.949451
Target:  5'- ------cGGGAAggCAGCCCCGcGGCGCg -3'
miRNA:   3'- cguuauaCCCUUg-GUCGGGGU-CUGUG- -5'
5123 5' -52.8 NC_001798.1 + 35396 0.71 0.79592
Target:  5'- ----cGUGGG-GCCGGCCgCCGGAUGCc -3'
miRNA:   3'- cguuaUACCCuUGGUCGG-GGUCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 36821 0.68 0.923029
Target:  5'- uGCGGUcuaguggucggcGUGGGGACCGGCUgUguggugggugggggAGGCACg -3'
miRNA:   3'- -CGUUA------------UACCCUUGGUCGGgG--------------UCUGUG- -5'
5123 5' -52.8 NC_001798.1 + 40841 0.7 0.872124
Target:  5'- cGCGuuuuUGGGGGCCgAGCCCC-GcCGCa -3'
miRNA:   3'- -CGUuau-ACCCUUGG-UCGGGGuCuGUG- -5'
5123 5' -52.8 NC_001798.1 + 42698 0.73 0.727593
Target:  5'- gGC-GUcgGGGAACCAGUCCCcGuCGCc -3'
miRNA:   3'- -CGuUAuaCCCUUGGUCGGGGuCuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.