miRNA display CGI


Results 61 - 80 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 5' -69 NC_001798.1 + 3992 0.67 0.343539
Target:  5'- -aCCGCCgGGGCcGCCCG-GCCgugaagcggCCCg -3'
miRNA:   3'- gaGGCGG-CCCGcCGGGCgCGGa--------GGGg -5'
5124 5' -69 NC_001798.1 + 9609 0.67 0.343539
Target:  5'- -cCCGa-GGGCGGCCagcaacaGgGCCgCCCCc -3'
miRNA:   3'- gaGGCggCCCGCCGGg------CgCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 55023 0.67 0.343539
Target:  5'- -cCUGCCGGGagacGCCC-CGgaCUCCCCg -3'
miRNA:   3'- gaGGCGGCCCgc--CGGGcGCg-GAGGGG- -5'
5124 5' -69 NC_001798.1 + 131383 0.67 0.343539
Target:  5'- aUCCcCUGGG-GGCCCG-GCgUCCCa -3'
miRNA:   3'- gAGGcGGCCCgCCGGGCgCGgAGGGg -5'
5124 5' -69 NC_001798.1 + 138727 0.67 0.343539
Target:  5'- -gCC-CCGGGcCGGCgCGCuCCgcggCCCCg -3'
miRNA:   3'- gaGGcGGCCC-GCCGgGCGcGGa---GGGG- -5'
5124 5' -69 NC_001798.1 + 109709 0.67 0.342839
Target:  5'- cCUCgGCCgagcagcGGGaaCGcGCCCGCcgggGCCUCCUCa -3'
miRNA:   3'- -GAGgCGG-------CCC--GC-CGGGCG----CGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 4970 0.67 0.33659
Target:  5'- cCUCgGCCccGCGGCCCuGCGCgUCgUCg -3'
miRNA:   3'- -GAGgCGGccCGCCGGG-CGCGgAGgGG- -5'
5124 5' -69 NC_001798.1 + 58320 0.67 0.33659
Target:  5'- gCUCCGUCa---GGCCCGcCGCCgcguggCCCCc -3'
miRNA:   3'- -GAGGCGGcccgCCGGGC-GCGGa-----GGGG- -5'
5124 5' -69 NC_001798.1 + 125540 0.67 0.33659
Target:  5'- -gCCGCCGaGCgucaGGCCCGCcgacGCCUCgUCg -3'
miRNA:   3'- gaGGCGGCcCG----CCGGGCG----CGGAGgGG- -5'
5124 5' -69 NC_001798.1 + 1136 0.67 0.33659
Target:  5'- gCUCgCGCCucGGCGGCguggccagccCCGCGgCggUCCCCa -3'
miRNA:   3'- -GAG-GCGGc-CCGCCG----------GGCGCgG--AGGGG- -5'
5124 5' -69 NC_001798.1 + 23600 0.67 0.33659
Target:  5'- -cCCGCCcaGGGcCGaGCCCGCcccgGCCcggacCCCCg -3'
miRNA:   3'- gaGGCGG--CCC-GC-CGGGCG----CGGa----GGGG- -5'
5124 5' -69 NC_001798.1 + 28855 0.67 0.33659
Target:  5'- -aCCGgCgaGGGCGGCCuCG-GCCggcggagCCCCg -3'
miRNA:   3'- gaGGCgG--CCCGCCGG-GCgCGGa------GGGG- -5'
5124 5' -69 NC_001798.1 + 81916 0.67 0.33659
Target:  5'- uUCCGCCcGGCcccgccucGGCUCGCgggGCCUUUCCc -3'
miRNA:   3'- gAGGCGGcCCG--------CCGGGCG---CGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 153700 0.67 0.33659
Target:  5'- -gCCGCCGGcGCaGGCUcaggCGCGCCagguaCUCCg -3'
miRNA:   3'- gaGGCGGCC-CG-CCGG----GCGCGGa----GGGG- -5'
5124 5' -69 NC_001798.1 + 21808 0.67 0.33659
Target:  5'- -cCCGCCucgGGGCGgaGCCCGCGggaugaCgcgggCCCCg -3'
miRNA:   3'- gaGGCGG---CCCGC--CGGGCGCg-----Ga----GGGG- -5'
5124 5' -69 NC_001798.1 + 94456 0.67 0.334526
Target:  5'- -cCCGCCgagagcagcuucgaGGGCGacguuGCCCGCGUgaCCCUu -3'
miRNA:   3'- gaGGCGG--------------CCCGC-----CGGGCGCGgaGGGG- -5'
5124 5' -69 NC_001798.1 + 61864 0.67 0.329745
Target:  5'- -gCCGCCGgcccagcccGGCGGCCCccucggGCGCg-CCCUc -3'
miRNA:   3'- gaGGCGGC---------CCGCCGGG------CGCGgaGGGG- -5'
5124 5' -69 NC_001798.1 + 88094 0.67 0.329745
Target:  5'- gCUCgCGgaGGGCGGCcagCCGCGCgaccguCUCCUCu -3'
miRNA:   3'- -GAG-GCggCCCGCCG---GGCGCG------GAGGGG- -5'
5124 5' -69 NC_001798.1 + 102994 0.67 0.329745
Target:  5'- cCUCCacGCCGGG-GGCCCagguGCGCCcggCCa- -3'
miRNA:   3'- -GAGG--CGGCCCgCCGGG----CGCGGa--GGgg -5'
5124 5' -69 NC_001798.1 + 57156 0.67 0.329745
Target:  5'- -gCCG-CGGGCuggcgcccgGGCCgGCGCC-CUCCg -3'
miRNA:   3'- gaGGCgGCCCG---------CCGGgCGCGGaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.