miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 5' -69 NC_001798.1 + 28811 0.66 0.364998
Target:  5'- cCUCCGCCGccGCgGGCCCGgGCCgUCg-- -3'
miRNA:   3'- -GAGGCGGCc-CG-CCGGGCgCGG-AGggg -5'
5124 5' -69 NC_001798.1 + 70203 0.66 0.364998
Target:  5'- cCUCCGCCGG-----CCGC-CCUCCCCc -3'
miRNA:   3'- -GAGGCGGCCcgccgGGCGcGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 84543 0.66 0.364998
Target:  5'- aUCgCGaCCGGGCaagGGUgCGCGUUcCCCCa -3'
miRNA:   3'- gAG-GC-GGCCCG---CCGgGCGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 134373 0.66 0.364998
Target:  5'- -cCCGCCGGcCGcucCUCGCGCCgCCCUc -3'
miRNA:   3'- gaGGCGGCCcGCc--GGGCGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 76863 0.66 0.364998
Target:  5'- gUCCgGCCGugcuGGCGaCCCuGCggGCCUCCCUg -3'
miRNA:   3'- gAGG-CGGC----CCGCcGGG-CG--CGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 153085 0.66 0.364998
Target:  5'- -gCgGCgGGGCGGCgCCGgGCC-CUCg -3'
miRNA:   3'- gaGgCGgCCCGCCG-GGCgCGGaGGGg -5'
5124 5' -69 NC_001798.1 + 24722 0.66 0.364268
Target:  5'- -cCCGCgGGcGCGGCcgccccgCCGCacGCCgacgcgCCCCg -3'
miRNA:   3'- gaGGCGgCC-CGCCG-------GGCG--CGGa-----GGGG- -5'
5124 5' -69 NC_001798.1 + 135764 0.66 0.357743
Target:  5'- aUCCuCC-GGCGGCCgGcCGCCggCCCg -3'
miRNA:   3'- gAGGcGGcCCGCCGGgC-GCGGagGGG- -5'
5124 5' -69 NC_001798.1 + 43079 0.66 0.357743
Target:  5'- --gCGCCGGGCucgGGCgCCGCcGCCgcgUCCg -3'
miRNA:   3'- gagGCGGCCCG---CCG-GGCG-CGGa--GGGg -5'
5124 5' -69 NC_001798.1 + 108448 0.66 0.357743
Target:  5'- gCUCgGCCGGccucggaacGCGaGCCUGC-CCgagcUCCCCg -3'
miRNA:   3'- -GAGgCGGCC---------CGC-CGGGCGcGG----AGGGG- -5'
5124 5' -69 NC_001798.1 + 95691 0.66 0.357743
Target:  5'- -gCgGCgGgGGCGGCCgGCGUCgCCCg -3'
miRNA:   3'- gaGgCGgC-CCGCCGGgCGCGGaGGGg -5'
5124 5' -69 NC_001798.1 + 87947 0.66 0.353439
Target:  5'- cCUCCGCCagcucGGacaccagcagcuugcGgGGCUuggaCGCGCCUCCCg -3'
miRNA:   3'- -GAGGCGG-----CC---------------CgCCGG----GCGCGGAGGGg -5'
5124 5' -69 NC_001798.1 + 138901 0.66 0.3513
Target:  5'- gUCCGCuUGGGCcGCCCGgCGCaaagcagucuaccaCCCCg -3'
miRNA:   3'- gAGGCG-GCCCGcCGGGC-GCGga------------GGGG- -5'
5124 5' -69 NC_001798.1 + 152095 0.66 0.35059
Target:  5'- ---gGCCGGGgguCGGcCCCGUcaaGCgUCCCCg -3'
miRNA:   3'- gaggCGGCCC---GCC-GGGCG---CGgAGGGG- -5'
5124 5' -69 NC_001798.1 + 152228 0.66 0.35059
Target:  5'- gUCUGCCGcGGCGGCCgcucgGgGCCgggguccgCCCg -3'
miRNA:   3'- gAGGCGGC-CCGCCGGg----CgCGGa-------GGGg -5'
5124 5' -69 NC_001798.1 + 80784 0.66 0.35059
Target:  5'- aCUCgCGCCccGGCGGgCCGgaCGCCgCCCUg -3'
miRNA:   3'- -GAG-GCGGc-CCGCCgGGC--GCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 50926 0.66 0.35059
Target:  5'- gUCCGUgcgCGGGCauGCCguacgccggaggCGCGCCUCCaCCc -3'
miRNA:   3'- gAGGCG---GCCCGc-CGG------------GCGCGGAGG-GG- -5'
5124 5' -69 NC_001798.1 + 131383 0.67 0.343539
Target:  5'- aUCCcCUGGG-GGCCCG-GCgUCCCa -3'
miRNA:   3'- gAGGcGGCCCgCCGGGCgCGgAGGGg -5'
5124 5' -69 NC_001798.1 + 55023 0.67 0.343539
Target:  5'- -cCUGCCGGGagacGCCC-CGgaCUCCCCg -3'
miRNA:   3'- gaGGCGGCCCgc--CGGGcGCg-GAGGGG- -5'
5124 5' -69 NC_001798.1 + 9609 0.67 0.343539
Target:  5'- -cCCGa-GGGCGGCCagcaacaGgGCCgCCCCc -3'
miRNA:   3'- gaGGCggCCCGCCGGg------CgCGGaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.