miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 5' -69 NC_001798.1 + 18304 0.66 0.386606
Target:  5'- -cUCGCCGGGaaGGCCgGgGCCguguuugUCUCCg -3'
miRNA:   3'- gaGGCGGCCCg-CCGGgCgCGG-------AGGGG- -5'
5124 5' -69 NC_001798.1 + 113628 0.66 0.37981
Target:  5'- -aUCGCCuGcGCGGCCgGCGCCgCCa- -3'
miRNA:   3'- gaGGCGGcC-CGCCGGgCGCGGaGGgg -5'
5124 5' -69 NC_001798.1 + 29308 0.66 0.37981
Target:  5'- -gCCGCCGGGUGGgUgG-GCUgaucggCCCCu -3'
miRNA:   3'- gaGGCGGCCCGCCgGgCgCGGa-----GGGG- -5'
5124 5' -69 NC_001798.1 + 35624 0.66 0.37981
Target:  5'- aCUCUGCCcGGCucGCCC-CGUCcCCCCu -3'
miRNA:   3'- -GAGGCGGcCCGc-CGGGcGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 28391 0.66 0.37981
Target:  5'- -gCCGCgCGGGaaGGUa--CGCCUCCCCu -3'
miRNA:   3'- gaGGCG-GCCCg-CCGggcGCGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 30821 0.66 0.37981
Target:  5'- -cCCG-CGGaCGGCCC-CGCgCUCCCUn -3'
miRNA:   3'- gaGGCgGCCcGCCGGGcGCG-GAGGGG- -5'
5124 5' -69 NC_001798.1 + 71847 0.66 0.37981
Target:  5'- -cCCGUCGGGCGccuaGCCa-CGCC-CCCUc -3'
miRNA:   3'- gaGGCGGCCCGC----CGGgcGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 94396 0.66 0.37981
Target:  5'- gUCgCGCUcucggaggGGGCGGCuauCUGCGCC-CCCa -3'
miRNA:   3'- gAG-GCGG--------CCCGCCG---GGCGCGGaGGGg -5'
5124 5' -69 NC_001798.1 + 153836 0.66 0.37981
Target:  5'- --gUGCgGGGCcuCCgGCGCCUUCCCc -3'
miRNA:   3'- gagGCGgCCCGccGGgCGCGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 58894 0.66 0.37981
Target:  5'- -aCCcCCGGa-GGCgCGCcgGCCUCCCCg -3'
miRNA:   3'- gaGGcGGCCcgCCGgGCG--CGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 78862 0.66 0.377563
Target:  5'- -gCCGCCuggGGGCgcucuuugauacucGGCgCCGCGUCgacgCCCUg -3'
miRNA:   3'- gaGGCGG---CCCG--------------CCG-GGCGCGGa---GGGG- -5'
5124 5' -69 NC_001798.1 + 39530 0.66 0.373837
Target:  5'- cCUCCGCgccgcgccucgccgUGGGUGGCgccggggccguccguCCGCGCCgacgcgggguggcgaCCCCc -3'
miRNA:   3'- -GAGGCG--------------GCCCGCCG---------------GGCGCGGa--------------GGGG- -5'
5124 5' -69 NC_001798.1 + 79504 0.66 0.373095
Target:  5'- -gCCGCCGGGgcgaGGCguaucugCGCGCCggcggagacccggggCCCCu -3'
miRNA:   3'- gaGGCGGCCCg---CCGg------GCGCGGa--------------GGGG- -5'
5124 5' -69 NC_001798.1 + 83848 0.66 0.372354
Target:  5'- -cCCGuCCGGGCggcgcuggcgGGCCCGaggcgGCgaCCCCc -3'
miRNA:   3'- gaGGC-GGCCCG----------CCGGGCg----CGgaGGGG- -5'
5124 5' -69 NC_001798.1 + 9282 0.66 0.372354
Target:  5'- ---gGCCuGGGagugacgaCGGCCCGgGCUUCCCg -3'
miRNA:   3'- gaggCGG-CCC--------GCCGGGCgCGGAGGGg -5'
5124 5' -69 NC_001798.1 + 96998 0.66 0.372354
Target:  5'- ---gGCCaGGGcCGGCCCGCcGCC-CgCCg -3'
miRNA:   3'- gaggCGG-CCC-GCCGGGCG-CGGaGgGG- -5'
5124 5' -69 NC_001798.1 + 97844 0.66 0.370137
Target:  5'- --aCGgCGGGCgcgGGCacggucaucgacaaCCGCGCCgCCCCg -3'
miRNA:   3'- gagGCgGCCCG---CCG--------------GGCGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 134373 0.66 0.364998
Target:  5'- -cCCGCCGGcCGcucCUCGCGCCgCCCUc -3'
miRNA:   3'- gaGGCGGCCcGCc--GGGCGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 84543 0.66 0.364998
Target:  5'- aUCgCGaCCGGGCaagGGUgCGCGUUcCCCCa -3'
miRNA:   3'- gAG-GC-GGCCCG---CCGgGCGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 70203 0.66 0.364998
Target:  5'- cCUCCGCCGG-----CCGC-CCUCCCCc -3'
miRNA:   3'- -GAGGCGGCCcgccgGGCGcGGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.