miRNA display CGI


Results 21 - 40 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 5' -69 NC_001798.1 + 3534 0.68 0.272779
Target:  5'- -cCCaGCCGaaGCGGCCCGCcGCCauggcguaCCCCa -3'
miRNA:   3'- gaGG-CGGCc-CGCCGGGCG-CGGa-------GGGG- -5'
5124 5' -69 NC_001798.1 + 3786 0.74 0.115623
Target:  5'- --gCGCCGGGgcgcCcgaggccucgaaccgGGCCCGCGCCUCCuCCg -3'
miRNA:   3'- gagGCGGCCC----G---------------CCGGGCGCGGAGG-GG- -5'
5124 5' -69 NC_001798.1 + 3886 0.66 0.387366
Target:  5'- --gCGCCccggGGGCGGggggccggcCCCGgGCCacggcUCCCCg -3'
miRNA:   3'- gagGCGG----CCCGCC---------GGGCgCGG-----AGGGG- -5'
5124 5' -69 NC_001798.1 + 3992 0.67 0.343539
Target:  5'- -aCCGCCgGGGCcGCCCG-GCCgugaagcggCCCg -3'
miRNA:   3'- gaGGCGG-CCCGcCGGGCgCGGa--------GGGg -5'
5124 5' -69 NC_001798.1 + 4042 0.66 0.395019
Target:  5'- -aCCGCCGcGCgGGCCCGgCGgCgCUCCa -3'
miRNA:   3'- gaGGCGGCcCG-CCGGGC-GCgGaGGGG- -5'
5124 5' -69 NC_001798.1 + 4109 0.69 0.244691
Target:  5'- gCUCgGCCcuGGGCGGgCUcggccgggGCGCCgCCCCc -3'
miRNA:   3'- -GAGgCGG--CCCGCCgGG--------CGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 4713 0.74 0.117286
Target:  5'- -gCCGuCCGcGGCaGGCUCGUcgacgGCCUCCCCg -3'
miRNA:   3'- gaGGC-GGC-CCG-CCGGGCG-----CGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 4911 0.72 0.159211
Target:  5'- -gCCGCCGGucgucuccgccGCGGCCCGgagaCGUC-CCCCg -3'
miRNA:   3'- gaGGCGGCC-----------CGCCGGGC----GCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 4970 0.67 0.33659
Target:  5'- cCUCgGCCccGCGGCCCuGCGCgUCgUCg -3'
miRNA:   3'- -GAGgCGGccCGCCGGG-CGCGgAGgGG- -5'
5124 5' -69 NC_001798.1 + 5387 0.72 0.158842
Target:  5'- gUCCGUgGcGGCGGCCCguuggucGCGCCgCCgCCg -3'
miRNA:   3'- gAGGCGgC-CCGCCGGG-------CGCGGaGG-GG- -5'
5124 5' -69 NC_001798.1 + 5450 0.68 0.297068
Target:  5'- -cCCgGCgCGGGCGGCUUcCGCUUCCgCCc -3'
miRNA:   3'- gaGG-CG-GCCCGCCGGGcGCGGAGG-GG- -5'
5124 5' -69 NC_001798.1 + 5612 0.67 0.303397
Target:  5'- gUCCG-CGGGCGGCUC-CGCC-CCa- -3'
miRNA:   3'- gAGGCgGCCCGCCGGGcGCGGaGGgg -5'
5124 5' -69 NC_001798.1 + 5735 0.7 0.219047
Target:  5'- -cCUGCCcGG-GGCCCGCGUCaUCCCg -3'
miRNA:   3'- gaGGCGGcCCgCCGGGCGCGG-AGGGg -5'
5124 5' -69 NC_001798.1 + 5873 0.7 0.219047
Target:  5'- -cCUGCCcGG-GGCCCGCGUCaUCCCg -3'
miRNA:   3'- gaGGCGGcCCgCCGGGCGCGG-AGGGg -5'
5124 5' -69 NC_001798.1 + 9282 0.66 0.372354
Target:  5'- ---gGCCuGGGagugacgaCGGCCCGgGCUUCCCg -3'
miRNA:   3'- gaggCGG-CCC--------GCCGGGCgCGGAGGGg -5'
5124 5' -69 NC_001798.1 + 9431 0.68 0.272779
Target:  5'- uCUCCGgaGGGUccugccacagGGaCCCGuCGCgCUCCCCc -3'
miRNA:   3'- -GAGGCggCCCG----------CC-GGGC-GCG-GAGGGG- -5'
5124 5' -69 NC_001798.1 + 9609 0.67 0.343539
Target:  5'- -cCCGa-GGGCGGCCagcaacaGgGCCgCCCCc -3'
miRNA:   3'- gaGGCggCCCGCCGGg------CgCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 10666 0.69 0.23937
Target:  5'- -cCCGUCgGGGgGGCCacaGCGCCaCCCa -3'
miRNA:   3'- gaGGCGG-CCCgCCGGg--CGCGGaGGGg -5'
5124 5' -69 NC_001798.1 + 11038 0.66 0.395019
Target:  5'- cCUCCccCCGGGCcccGCCCauccauuaccCGCCUCCCa -3'
miRNA:   3'- -GAGGc-GGCCCGc--CGGGc---------GCGGAGGGg -5'
5124 5' -69 NC_001798.1 + 15130 0.66 0.387366
Target:  5'- gUCC-UCGGGgGGUUCGC-CgUCCCCg -3'
miRNA:   3'- gAGGcGGCCCgCCGGGCGcGgAGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.