miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 5' -69 NC_001798.1 + 81782 0.75 0.092294
Target:  5'- cCUCCGCCccccccgagGGGUGGCguCCGCcgGCaCUCCCCg -3'
miRNA:   3'- -GAGGCGG---------CCCGCCG--GGCG--CG-GAGGGG- -5'
5124 5' -69 NC_001798.1 + 51175 0.75 0.096851
Target:  5'- gUCCGaggcCCGGGCGG-CgGCGCCcCCCCg -3'
miRNA:   3'- gAGGC----GGCCCGCCgGgCGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 40320 0.75 0.096851
Target:  5'- -cCCGUCGGGCGucaccgcccccGCCCcCGCCgUCCCCa -3'
miRNA:   3'- gaGGCGGCCCGC-----------CGGGcGCGG-AGGGG- -5'
5124 5' -69 NC_001798.1 + 54608 0.74 0.104087
Target:  5'- -aUgGCCgGGGCGccCCCGCGCCUCCCg -3'
miRNA:   3'- gaGgCGG-CCCGCc-GGGCGCGGAGGGg -5'
5124 5' -69 NC_001798.1 + 25254 0.74 0.104087
Target:  5'- -cCCGCaGGGCGGCUgGCGCCgccagCCgCCg -3'
miRNA:   3'- gaGGCGgCCCGCCGGgCGCGGa----GG-GG- -5'
5124 5' -69 NC_001798.1 + 72233 0.74 0.111829
Target:  5'- -gCCGUCGagcagcuGCGGCCCGCgguccagcuGCCUCCCCc -3'
miRNA:   3'- gaGGCGGCc------CGCCGGGCG---------CGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 103033 0.74 0.114527
Target:  5'- gCUCgGCCucGGCGGCCuCGCGUCgcaCCCCc -3'
miRNA:   3'- -GAGgCGGc-CCGCCGG-GCGCGGa--GGGG- -5'
5124 5' -69 NC_001798.1 + 3786 0.74 0.115623
Target:  5'- --gCGCCGGGgcgcCcgaggccucgaaccgGGCCCGCGCCUCCuCCg -3'
miRNA:   3'- gagGCGGCCC----G---------------CCGGGCGCGGAGG-GG- -5'
5124 5' -69 NC_001798.1 + 115579 0.74 0.117286
Target:  5'- --aCGCCuGGCGGCa-GCGCCUCgCCCa -3'
miRNA:   3'- gagGCGGcCCGCCGggCGCGGAG-GGG- -5'
5124 5' -69 NC_001798.1 + 124142 0.74 0.117286
Target:  5'- -cCCGCCGuGGCGGaggccugucCCUGCGUCgCCCCg -3'
miRNA:   3'- gaGGCGGC-CCGCC---------GGGCGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 4713 0.74 0.117286
Target:  5'- -gCCGuCCGcGGCaGGCUCGUcgacgGCCUCCCCg -3'
miRNA:   3'- gaGGC-GGC-CCG-CCGGGCG-----CGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 27932 0.74 0.117286
Target:  5'- -gCCGCCGGGguccCGGCgCCG-GCCgcgCCCCg -3'
miRNA:   3'- gaGGCGGCCC----GCCG-GGCgCGGa--GGGG- -5'
5124 5' -69 NC_001798.1 + 53447 0.73 0.120107
Target:  5'- -gCUGUCGGGCGGCcagcugagCCGCGCCaUCCUa -3'
miRNA:   3'- gaGGCGGCCCGCCG--------GGCGCGG-AGGGg -5'
5124 5' -69 NC_001798.1 + 67308 0.73 0.120107
Target:  5'- uUCCGCCGagcgccacgacGGCGGUUCG-GCCaUCCCCg -3'
miRNA:   3'- gAGGCGGC-----------CCGCCGGGCgCGG-AGGGG- -5'
5124 5' -69 NC_001798.1 + 107435 0.73 0.125939
Target:  5'- -gUCGCCGcGGCGacCCCGCGCCccgaCCCCg -3'
miRNA:   3'- gaGGCGGC-CCGCc-GGGCGCGGa---GGGG- -5'
5124 5' -69 NC_001798.1 + 91819 0.73 0.125939
Target:  5'- -aCCGUgGGcGgGGCCCGaCGCCgCCCCu -3'
miRNA:   3'- gaGGCGgCC-CgCCGGGC-GCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 147200 0.73 0.128953
Target:  5'- -cCCGCCcGGCGGUCCG-GCCcgggCCCCc -3'
miRNA:   3'- gaGGCGGcCCGCCGGGCgCGGa---GGGG- -5'
5124 5' -69 NC_001798.1 + 130230 0.73 0.131102
Target:  5'- uUCCGCguagcccgggucucCGGGCGGCCCGCcacGCCUagaaCCg -3'
miRNA:   3'- gAGGCG--------------GCCCGCCGGGCG---CGGAgg--GG- -5'
5124 5' -69 NC_001798.1 + 43323 0.73 0.132033
Target:  5'- uUCCGCaggucugggGGGCGGCagugccgccccCCGCGUCgUCCCCg -3'
miRNA:   3'- gAGGCGg--------CCCGCCG-----------GGCGCGG-AGGGG- -5'
5124 5' -69 NC_001798.1 + 85305 0.73 0.13518
Target:  5'- gUCCGCCc-GCGGCCCGC-CCgcagaCCCCa -3'
miRNA:   3'- gAGGCGGccCGCCGGGCGcGGa----GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.