miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 5' -69 NC_001798.1 + 137915 1.09 0.000264
Target:  5'- cCUCCGCCGGGCGGCCCGCGCCUCCCCc -3'
miRNA:   3'- -GAGGCGGCCCGCCGGGCGCGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 25092 0.88 0.009371
Target:  5'- -gCCGCCGGGCGGCgccCCGCGCC-CCCCg -3'
miRNA:   3'- gaGGCGGCCCGCCG---GGCGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 52983 0.84 0.020903
Target:  5'- -aCCggGCUGGGCGGCCCgccacgcccauagGCGCCUCCCCa -3'
miRNA:   3'- gaGG--CGGCCCGCCGGG-------------CGCGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 34828 0.82 0.029743
Target:  5'- gCUCCGCCGGG-GGCCCGgGCCggaCCgCCg -3'
miRNA:   3'- -GAGGCGGCCCgCCGGGCgCGGa--GG-GG- -5'
5124 5' -69 NC_001798.1 + 62278 0.82 0.030494
Target:  5'- -cCCGCCGGGCGGCCCggcgggagcGCGCCaacucgcgcUCCCUg -3'
miRNA:   3'- gaGGCGGCCCGCCGGG---------CGCGG---------AGGGG- -5'
5124 5' -69 NC_001798.1 + 152649 0.78 0.052637
Target:  5'- -cCCGCCGGcGCGGCCCugagugGUGCCcgCCCCc -3'
miRNA:   3'- gaGGCGGCC-CGCCGGG------CGCGGa-GGGG- -5'
5124 5' -69 NC_001798.1 + 120182 0.78 0.057233
Target:  5'- -gCCGCCGGGCGGCUCGCagugauagaagaggaGCUcgggCCCCg -3'
miRNA:   3'- gaGGCGGCCCGCCGGGCG---------------CGGa---GGGG- -5'
5124 5' -69 NC_001798.1 + 84503 0.78 0.058084
Target:  5'- gUCCcCCGGGCGGCCgccguaGgGCUUCCCCa -3'
miRNA:   3'- gAGGcGGCCCGCCGGg-----CgCGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 81148 0.78 0.059529
Target:  5'- aUCC-UCGGGCGGCCCuucgaCGCCUCCCUc -3'
miRNA:   3'- gAGGcGGCCCGCCGGGc----GCGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 134167 0.77 0.062524
Target:  5'- -gCCGUCGcGGCcGCCCGCGCCgcgacggCCCCg -3'
miRNA:   3'- gaGGCGGC-CCGcCGGGCGCGGa------GGGG- -5'
5124 5' -69 NC_001798.1 + 34793 0.77 0.065665
Target:  5'- -gCCGCCGGcGCGGCCCGgGgCCccggggCCCCc -3'
miRNA:   3'- gaGGCGGCC-CGCCGGGCgC-GGa-----GGGG- -5'
5124 5' -69 NC_001798.1 + 31987 0.76 0.072408
Target:  5'- ---gGCCaagaGGGCGGCgCCGCGCCgggCCCCg -3'
miRNA:   3'- gaggCGG----CCCGCCG-GGCGCGGa--GGGG- -5'
5124 5' -69 NC_001798.1 + 1355 0.76 0.076025
Target:  5'- gCUCCGCCGGGCcGCCgcgcacgGCGUCgcgCCCCa -3'
miRNA:   3'- -GAGGCGGCCCGcCGGg------CGCGGa--GGGG- -5'
5124 5' -69 NC_001798.1 + 28349 0.76 0.077897
Target:  5'- cCUgCGCCGgcGGCGGCCCccCGCgUCCCCg -3'
miRNA:   3'- -GAgGCGGC--CCGCCGGGc-GCGgAGGGG- -5'
5124 5' -69 NC_001798.1 + 75187 0.76 0.079814
Target:  5'- --aCGCUGGG-GGCCCGcCGCC-CCCCg -3'
miRNA:   3'- gagGCGGCCCgCCGGGC-GCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 154095 0.76 0.081776
Target:  5'- --gCGCCGGggcGCGGCCgGCGCCggggaCCCCg -3'
miRNA:   3'- gagGCGGCC---CGCCGGgCGCGGa----GGGG- -5'
5124 5' -69 NC_001798.1 + 51135 0.75 0.085838
Target:  5'- -gUCGCCGGGaGGCCCGCGgUCaCCCCg -3'
miRNA:   3'- gaGGCGGCCCgCCGGGCGC-GGaGGGG- -5'
5124 5' -69 NC_001798.1 + 2092 0.75 0.089226
Target:  5'- aCUCCGgggggggcccgcccCCGGcGCGGCCCGCGgccagguCCUCgCCCg -3'
miRNA:   3'- -GAGGC--------------GGCC-CGCCGGGCGC-------GGAG-GGG- -5'
5124 5' -69 NC_001798.1 + 126261 0.75 0.089875
Target:  5'- -gCCGCCGGGCGuccggacGCCCaaGCGgccCCUCCCCc -3'
miRNA:   3'- gaGGCGGCCCGC-------CGGG--CGC---GGAGGGG- -5'
5124 5' -69 NC_001798.1 + 36635 0.75 0.090093
Target:  5'- -gCgGCCGGGCGGgggcgcgcuuucCCCGCGUCgCCCCu -3'
miRNA:   3'- gaGgCGGCCCGCC------------GGGCGCGGaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.