miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 5' -69 NC_001798.1 + 80 0.67 0.302759
Target:  5'- --gCGgCGGGCGGgcggcagggcagcCCCGCGCgcccccUUCCCCg -3'
miRNA:   3'- gagGCgGCCCGCC-------------GGGCGCG------GAGGGG- -5'
5124 5' -69 NC_001798.1 + 126 0.67 0.323003
Target:  5'- cCUCCcccggaGCCGGccgcucccccGCgGGCgCCGCcCCUCCCCc -3'
miRNA:   3'- -GAGG------CGGCC----------CG-CCG-GGCGcGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 193 0.67 0.302759
Target:  5'- -cCCGCgGGcgcccccgcGCGGCuuuuuucCCGCGCCcgCCCCc -3'
miRNA:   3'- gaGGCGgCC---------CGCCG-------GGCGCGGa-GGGG- -5'
5124 5' -69 NC_001798.1 + 409 0.67 0.323003
Target:  5'- -cCCGCCGagcucGCGGCa-GCcCCUCCCCc -3'
miRNA:   3'- gaGGCGGCc----CGCCGggCGcGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 442 0.69 0.25011
Target:  5'- --gCGCCacgGGGCugcGGuCCCGCggccGCCUCCCCc -3'
miRNA:   3'- gagGCGG---CCCG---CC-GGGCG----CGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 497 0.69 0.234146
Target:  5'- -cCCGCCccggGGGCuuccCCCGCcCCUCCCCc -3'
miRNA:   3'- gaGGCGG----CCCGcc--GGGCGcGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 590 0.68 0.278698
Target:  5'- gCUCCuGCgGGGgGGCUCGgGCCaCCUg -3'
miRNA:   3'- -GAGG-CGgCCCgCCGGGCgCGGaGGGg -5'
5124 5' -69 NC_001798.1 + 1136 0.67 0.33659
Target:  5'- gCUCgCGCCucGGCGGCguggccagccCCGCGgCggUCCCCa -3'
miRNA:   3'- -GAG-GCGGc-CCGCCG----------GGCGCgG--AGGGG- -5'
5124 5' -69 NC_001798.1 + 1213 0.71 0.170646
Target:  5'- gUCC-CCGcGCGGCCCGCGgCCgacgCCCa -3'
miRNA:   3'- gAGGcGGCcCGCCGGGCGC-GGa---GGGg -5'
5124 5' -69 NC_001798.1 + 1246 0.66 0.364998
Target:  5'- aUCUGCgGgGGCgGGCCCGCGUCcgCgUCg -3'
miRNA:   3'- gAGGCGgC-CCG-CCGGGCGCGGa-GgGG- -5'
5124 5' -69 NC_001798.1 + 1302 0.7 0.214202
Target:  5'- -gCCGUCGGGCucgagcagcGCCCGCGCgcagaaCUCCCg -3'
miRNA:   3'- gaGGCGGCCCGc--------CGGGCGCG------GAGGGg -5'
5124 5' -69 NC_001798.1 + 1355 0.76 0.076025
Target:  5'- gCUCCGCCGGGCcGCCgcgcacgGCGUCgcgCCCCa -3'
miRNA:   3'- -GAGGCGGCCCGcCGGg------CGCGGa--GGGG- -5'
5124 5' -69 NC_001798.1 + 1480 0.71 0.187032
Target:  5'- --gCGCCGGGCGccauggcgucGCCCGCGCCcgaggcggcggCCCg -3'
miRNA:   3'- gagGCGGCCCGC----------CGGGCGCGGa----------GGGg -5'
5124 5' -69 NC_001798.1 + 2016 0.67 0.309829
Target:  5'- -gCgGCCGuGGCgGGCCCGCagaGCCgguugCCCa -3'
miRNA:   3'- gaGgCGGC-CCG-CCGGGCG---CGGa----GGGg -5'
5124 5' -69 NC_001798.1 + 2092 0.75 0.089226
Target:  5'- aCUCCGgggggggcccgcccCCGGcGCGGCCCGCGgccagguCCUCgCCCg -3'
miRNA:   3'- -GAGGC--------------GGCC-CGCCGGGCGC-------GGAG-GGG- -5'
5124 5' -69 NC_001798.1 + 2571 0.67 0.309829
Target:  5'- -gCCGCgGGGCGGggggcgUCCGCGCggCUCUUCu -3'
miRNA:   3'- gaGGCGgCCCGCC------GGGCGCG--GAGGGG- -5'
5124 5' -69 NC_001798.1 + 2635 0.67 0.329745
Target:  5'- -cCCugGCCgGGGCGGggcucuugcgcuUgCGCGCCUCCCg -3'
miRNA:   3'- gaGG--CGG-CCCGCC------------GgGCGCGGAGGGg -5'
5124 5' -69 NC_001798.1 + 2873 0.68 0.297068
Target:  5'- -gCUGCCGc-CGGCCaCGCGCaggUCCCCg -3'
miRNA:   3'- gaGGCGGCccGCCGG-GCGCGg--AGGGG- -5'
5124 5' -69 NC_001798.1 + 2980 0.71 0.191339
Target:  5'- -gCgGCgGGGCGGCCgGC-CCgcgggCCCCg -3'
miRNA:   3'- gaGgCGgCCCGCCGGgCGcGGa----GGGG- -5'
5124 5' -69 NC_001798.1 + 3358 0.67 0.329745
Target:  5'- -gCCGUCGuGGCGGUUgGCGUCgCCgCCg -3'
miRNA:   3'- gaGGCGGC-CCGCCGGgCGCGGaGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.