miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 5' -69 NC_001798.1 + 154531 0.67 0.302759
Target:  5'- -cCCGCgGGcgcccccgcGCGGCuuuuuucCCGCGCCcgCCCCc -3'
miRNA:   3'- gaGGCGgCC---------CGCCG-------GGCGCGGa-GGGG- -5'
5124 5' -69 NC_001798.1 + 154464 0.67 0.323003
Target:  5'- cCUCCcccggaGCCGGccgcucccccGCgGGCgCCGCcCCUCCCCc -3'
miRNA:   3'- -GAGG------CGGCC----------CG-CCG-GGCGcGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 154418 0.67 0.302759
Target:  5'- --gCGgCGGGCGGgcggcagggcagcCCCGCGCgcccccUUCCCCg -3'
miRNA:   3'- gagGCgGCCCGCC-------------GGGCGCG------GAGGGG- -5'
5124 5' -69 NC_001798.1 + 154095 0.76 0.081776
Target:  5'- --gCGCCGGggcGCGGCCgGCGCCggggaCCCCg -3'
miRNA:   3'- gagGCGGCC---CGCCGGgCGCGGa----GGGG- -5'
5124 5' -69 NC_001798.1 + 153836 0.66 0.37981
Target:  5'- --gUGCgGGGCcuCCgGCGCCUUCCCc -3'
miRNA:   3'- gagGCGgCCCGccGGgCGCGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 153700 0.67 0.33659
Target:  5'- -gCCGCCGGcGCaGGCUcaggCGCGCCagguaCUCCg -3'
miRNA:   3'- gaGGCGGCC-CG-CCGG----GCGCGGa----GGGG- -5'
5124 5' -69 NC_001798.1 + 153433 0.7 0.219047
Target:  5'- -cCCGUCGGGCcaGGCgCGCGgCCgUCuCCCa -3'
miRNA:   3'- gaGGCGGCCCG--CCGgGCGC-GG-AG-GGG- -5'
5124 5' -69 NC_001798.1 + 153237 0.67 0.327712
Target:  5'- -cCCGCgGcGGCGGaggaCCCGCgcgccgccgccgccGCCUCCUCc -3'
miRNA:   3'- gaGGCGgC-CCGCC----GGGCG--------------CGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 153179 0.7 0.204788
Target:  5'- gCUCCGCCGGcCGaGgCCGC-CCUCgCCg -3'
miRNA:   3'- -GAGGCGGCCcGC-CgGGCGcGGAGgGG- -5'
5124 5' -69 NC_001798.1 + 153085 0.66 0.364998
Target:  5'- -gCgGCgGGGCGGCgCCGgGCC-CUCg -3'
miRNA:   3'- gaGgCGgCCCGCCG-GGCgCGGaGGGg -5'
5124 5' -69 NC_001798.1 + 153046 0.69 0.244691
Target:  5'- --gCGCgCGGuuGGCCgGCGCCgCCCCc -3'
miRNA:   3'- gagGCG-GCCcgCCGGgCGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 152649 0.78 0.052637
Target:  5'- -cCCGCCGGcGCGGCCCugagugGUGCCcgCCCCc -3'
miRNA:   3'- gaGGCGGCC-CGCCGGG------CGCGGa-GGGG- -5'
5124 5' -69 NC_001798.1 + 152546 0.66 0.387366
Target:  5'- cCUCU-CgGGGCGGCCC-CGUC-CCCg -3'
miRNA:   3'- -GAGGcGgCCCGCCGGGcGCGGaGGGg -5'
5124 5' -69 NC_001798.1 + 152228 0.66 0.35059
Target:  5'- gUCUGCCGcGGCGGCCgcucgGgGCCgggguccgCCCg -3'
miRNA:   3'- gAGGCGGC-CCGCCGGg----CgCGGa-------GGGg -5'
5124 5' -69 NC_001798.1 + 152095 0.66 0.35059
Target:  5'- ---gGCCGGGgguCGGcCCCGUcaaGCgUCCCCg -3'
miRNA:   3'- gaggCGGCCC---GCC-GGGCG---CGgAGGGG- -5'
5124 5' -69 NC_001798.1 + 151841 0.68 0.272779
Target:  5'- --gCGCgGGGCGuGaggcgggaccCCCGCGCCgugUCCCCc -3'
miRNA:   3'- gagGCGgCCCGC-C----------GGGCGCGG---AGGGG- -5'
5124 5' -69 NC_001798.1 + 150668 0.69 0.234146
Target:  5'- cCUCCGCCGccgcGGCGucuucGCCCacccgcGCGCCUgcgcgcgccCCCCg -3'
miRNA:   3'- -GAGGCGGC----CCGC-----CGGG------CGCGGA---------GGGG- -5'
5124 5' -69 NC_001798.1 + 150466 0.69 0.244691
Target:  5'- -gCCGCgCGGG-GGCgCGCGgCgcgCCCCg -3'
miRNA:   3'- gaGGCG-GCCCgCCGgGCGCgGa--GGGG- -5'
5124 5' -69 NC_001798.1 + 150136 0.69 0.234146
Target:  5'- -gCCGCgGGGCccgaguccGaCCCGCGCCUCUUCc -3'
miRNA:   3'- gaGGCGgCCCGc-------C-GGGCGCGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 150042 0.68 0.284719
Target:  5'- gUCCGgggcCCGGcGCGGCgCCGC-CCUcuuggcCCCCa -3'
miRNA:   3'- gAGGC----GGCC-CGCCG-GGCGcGGA------GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.