miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 5' -69 NC_001798.1 + 102222 0.66 0.387366
Target:  5'- -gUCGaCCGGGCgcGGCUcggggCGgGCCUCgCCCg -3'
miRNA:   3'- gaGGC-GGCCCG--CCGG-----GCgCGGAG-GGG- -5'
5124 5' -69 NC_001798.1 + 137915 1.09 0.000264
Target:  5'- cCUCCGCCGGGCGGCCCGCGCCUCCCCc -3'
miRNA:   3'- -GAGGCGGCCCGCCGGGCGCGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 15130 0.66 0.387366
Target:  5'- gUCC-UCGGGgGGUUCGC-CgUCCCCg -3'
miRNA:   3'- gAGGcGGCCCgCCGGGCGcGgAGGGG- -5'
5124 5' -69 NC_001798.1 + 24857 0.66 0.387366
Target:  5'- -gCCGCCGuGGCcGCCgugCGCGCCgugagCCUg -3'
miRNA:   3'- gaGGCGGC-CCGcCGG---GCGCGGa----GGGg -5'
5124 5' -69 NC_001798.1 + 46581 0.66 0.387366
Target:  5'- -gCC-CCGGGgGcaaaCCCGCGCgUCCCg -3'
miRNA:   3'- gaGGcGGCCCgCc---GGGCGCGgAGGGg -5'
5124 5' -69 NC_001798.1 + 128022 0.66 0.387366
Target:  5'- cCUCuCGCCGGGgGGCgCacaCGCCaucgaCCCg -3'
miRNA:   3'- -GAG-GCGGCCCgCCGgGc--GCGGag---GGG- -5'
5124 5' -69 NC_001798.1 + 152546 0.66 0.387366
Target:  5'- cCUCU-CgGGGCGGCCC-CGUC-CCCg -3'
miRNA:   3'- -GAGGcGgCCCGCCGGGcGCGGaGGGg -5'
5124 5' -69 NC_001798.1 + 3886 0.66 0.387366
Target:  5'- --gCGCCccggGGGCGGggggccggcCCCGgGCCacggcUCCCCg -3'
miRNA:   3'- gagGCGG----CCCGCC---------GGGCgCGG-----AGGGG- -5'
5124 5' -69 NC_001798.1 + 43262 0.66 0.387366
Target:  5'- -aUCGCCGGG-GGCgUCGUGCCcugcugCUCCg -3'
miRNA:   3'- gaGGCGGCCCgCCG-GGCGCGGa-----GGGG- -5'
5124 5' -69 NC_001798.1 + 74966 0.66 0.387366
Target:  5'- aUCUGaccuCGGGCgagaGGCCCGCcCCcaaggCCCCg -3'
miRNA:   3'- gAGGCg---GCCCG----CCGGGCGcGGa----GGGG- -5'
5124 5' -69 NC_001798.1 + 85361 0.66 0.387366
Target:  5'- cCUUCGCCGcGGCGuCCgucgacaccuuCGCGCUggaccgCCCCu -3'
miRNA:   3'- -GAGGCGGC-CCGCcGG-----------GCGCGGa-----GGGG- -5'
5124 5' -69 NC_001798.1 + 126415 0.66 0.398108
Target:  5'- gUCCcCCGaGGCccccGGCCCugcggccaagcuaagGCGCCcgCCCCu -3'
miRNA:   3'- gAGGcGGC-CCG----CCGGG---------------CGCGGa-GGGG- -5'
5124 5' -69 NC_001798.1 + 48118 0.66 0.387366
Target:  5'- -cCCcCCGGGUGGCCggguucaacaagCGCGUCUUCUg -3'
miRNA:   3'- gaGGcGGCCCGCCGG------------GCGCGGAGGGg -5'
5124 5' -69 NC_001798.1 + 147290 0.66 0.39425
Target:  5'- uCUCCcucCCGGGCcgccccgcucccgGGCCCGaC-CCUCgCCCc -3'
miRNA:   3'- -GAGGc--GGCCCG-------------CCGGGC-GcGGAG-GGG- -5'
5124 5' -69 NC_001798.1 + 32025 0.66 0.395019
Target:  5'- aCUCgGgCGaccGCGGCCaCGgGCCgcucgCCCCg -3'
miRNA:   3'- -GAGgCgGCc--CGCCGG-GCgCGGa----GGGG- -5'
5124 5' -69 NC_001798.1 + 27243 0.66 0.395019
Target:  5'- -gCCGCgGgggaGGCGGCCgCGgGaCCgcagCCCCg -3'
miRNA:   3'- gaGGCGgC----CCGCCGG-GCgC-GGa---GGGG- -5'
5124 5' -69 NC_001798.1 + 4042 0.66 0.395019
Target:  5'- -aCCGCCGcGCgGGCCCGgCGgCgCUCCa -3'
miRNA:   3'- gaGGCGGCcCG-CCGGGC-GCgGaGGGG- -5'
5124 5' -69 NC_001798.1 + 11038 0.66 0.395019
Target:  5'- cCUCCccCCGGGCcccGCCCauccauuaccCGCCUCCCa -3'
miRNA:   3'- -GAGGc-GGCCCGc--CGGGc---------GCGGAGGGg -5'
5124 5' -69 NC_001798.1 + 20479 0.66 0.395019
Target:  5'- --gCGCCGGuGCGcGUgCGCGa-UCCCCg -3'
miRNA:   3'- gagGCGGCC-CGC-CGgGCGCggAGGGG- -5'
5124 5' -69 NC_001798.1 + 70425 0.66 0.395019
Target:  5'- cCUCC-CCGGGCugcuGGUgcaCCGCauggcggugGCgCUCCCCg -3'
miRNA:   3'- -GAGGcGGCCCG----CCG---GGCG---------CG-GAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.