miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 5' -69 NC_001798.1 + 149999 0.68 0.266961
Target:  5'- --aCGCCGGggcgaGCGGCCCGUGgCCgcggUCgCCCg -3'
miRNA:   3'- gagGCGGCC-----CGCCGGGCGC-GG----AG-GGG- -5'
5124 5' -69 NC_001798.1 + 149467 0.68 0.284719
Target:  5'- gCUCCacGCgGGggccGCGGCCCGCagcagguccGCCacguUCCCCg -3'
miRNA:   3'- -GAGG--CGgCC----CGCCGGGCG---------CGG----AGGGG- -5'
5124 5' -69 NC_001798.1 + 147290 0.66 0.39425
Target:  5'- uCUCCcucCCGGGCcgccccgcucccgGGCCCGaC-CCUCgCCCc -3'
miRNA:   3'- -GAGGc--GGCCCG-------------CCGGGC-GcGGAG-GGG- -5'
5124 5' -69 NC_001798.1 + 147200 0.73 0.128953
Target:  5'- -cCCGCCcGGCGGUCCG-GCCcgggCCCCc -3'
miRNA:   3'- gaGGCGGcCCGCCGGGCgCGGa---GGGG- -5'
5124 5' -69 NC_001798.1 + 147016 0.67 0.303397
Target:  5'- -aCCcCCGGGCGGgCCGgggcuuggcCGCCgaggugcgCCCCg -3'
miRNA:   3'- gaGGcGGCCCGCCgGGC---------GCGGa-------GGGG- -5'
5124 5' -69 NC_001798.1 + 146598 0.71 0.170646
Target:  5'- -gCCGCgGcgccaGCGGCCCaCGCCUCCCg -3'
miRNA:   3'- gaGGCGgCc----CGCCGGGcGCGGAGGGg -5'
5124 5' -69 NC_001798.1 + 146484 0.7 0.223986
Target:  5'- gCUCCgggGCCGGGcCGGgccggcaacgcCCCGCGCCggCCgCg -3'
miRNA:   3'- -GAGG---CGGCCC-GCC-----------GGGCGCGGa-GGgG- -5'
5124 5' -69 NC_001798.1 + 145724 0.7 0.204788
Target:  5'- -gCC-CCGGcccCGGCCCGCGCC-CCgCCg -3'
miRNA:   3'- gaGGcGGCCc--GCCGGGCGCGGaGG-GG- -5'
5124 5' -69 NC_001798.1 + 145542 0.72 0.162944
Target:  5'- -cCCGCCcGGCcGCCCGCGUCgcgccggcgCCCCc -3'
miRNA:   3'- gaGGCGGcCCGcCGGGCGCGGa--------GGGG- -5'
5124 5' -69 NC_001798.1 + 145500 0.7 0.219047
Target:  5'- -cCCGCCcGGCcGCCgCGCGCC-CCCg -3'
miRNA:   3'- gaGGCGGcCCGcCGG-GCGCGGaGGGg -5'
5124 5' -69 NC_001798.1 + 145458 0.7 0.219047
Target:  5'- -cCCGCCcGGCcGCCgCGCGCC-CCCg -3'
miRNA:   3'- gaGGCGGcCCGcCGG-GCGCGGaGGGg -5'
5124 5' -69 NC_001798.1 + 145416 0.7 0.219047
Target:  5'- -cCCGCCcGGCcGCCgCGCGCC-CCCg -3'
miRNA:   3'- gaGGCGGcCCGcCGG-GCGCGGaGGGg -5'
5124 5' -69 NC_001798.1 + 141207 0.68 0.297068
Target:  5'- -cCCGCgggaCGGG-GGCCCGgaCGaCUUCCCCg -3'
miRNA:   3'- gaGGCG----GCCCgCCGGGC--GC-GGAGGGG- -5'
5124 5' -69 NC_001798.1 + 138901 0.66 0.3513
Target:  5'- gUCCGCuUGGGCcGCCCGgCGCaaagcagucuaccaCCCCg -3'
miRNA:   3'- gAGGCG-GCCCGcCGGGC-GCGga------------GGGG- -5'
5124 5' -69 NC_001798.1 + 138727 0.67 0.343539
Target:  5'- -gCC-CCGGGcCGGCgCGCuCCgcggCCCCg -3'
miRNA:   3'- gaGGcGGCCC-GCCGgGCGcGGa---GGGG- -5'
5124 5' -69 NC_001798.1 + 137915 1.09 0.000264
Target:  5'- cCUCCGCCGGGCGGCCCGCGCCUCCCCc -3'
miRNA:   3'- -GAGGCGGCCCGCCGGGCGCGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 135764 0.66 0.357743
Target:  5'- aUCCuCC-GGCGGCCgGcCGCCggCCCg -3'
miRNA:   3'- gAGGcGGcCCGCCGGgC-GCGGagGGG- -5'
5124 5' -69 NC_001798.1 + 135569 0.72 0.159211
Target:  5'- uUCgGCCaacGGCauacGCCCGCGCCUCgCCCc -3'
miRNA:   3'- gAGgCGGc--CCGc---CGGGCGCGGAG-GGG- -5'
5124 5' -69 NC_001798.1 + 135038 0.69 0.244691
Target:  5'- -gCCgGCCGuggccucggaGGCGGCCgGcCGCCUCCUg -3'
miRNA:   3'- gaGG-CGGC----------CCGCCGGgC-GCGGAGGGg -5'
5124 5' -69 NC_001798.1 + 134373 0.66 0.364998
Target:  5'- -cCCGCCGGcCGcucCUCGCGCCgCCCUc -3'
miRNA:   3'- gaGGCGGCCcGCc--GGGCGCGGaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.