Results 41 - 60 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5124 | 5' | -69 | NC_001798.1 | + | 86892 | 0.73 | 0.138397 |
Target: 5'- -gCCGCCGGGaacccCGGCguggagcgCCGgGCCUCCCg -3' miRNA: 3'- gaGGCGGCCC-----GCCG--------GGCgCGGAGGGg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 29033 | 0.72 | 0.145042 |
Target: 5'- aCUCCGCCccGGCGaccgcCCCGCGCCggcUUCCCg -3' miRNA: 3'- -GAGGCGGc-CCGCc----GGGCGCGG---AGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 32774 | 0.72 | 0.151977 |
Target: 5'- uCUCgggaGCaGGGCGcGCCCGCGCCggccggcgacgCCCCc -3' miRNA: 3'- -GAGg---CGgCCCGC-CGGGCGCGGa----------GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 25578 | 0.72 | 0.158107 |
Target: 5'- -gCUGCCGGGCgaggaccuggccgcGGgCCGCGCCgggggcgggCCCCc -3' miRNA: 3'- gaGGCGGCCCG--------------CCgGGCGCGGa--------GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 5387 | 0.72 | 0.158842 |
Target: 5'- gUCCGUgGcGGCGGCCCguuggucGCGCCgCCgCCg -3' miRNA: 3'- gAGGCGgC-CCGCCGGG-------CGCGGaGG-GG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 35529 | 0.72 | 0.159211 |
Target: 5'- uCUCCGCCgcggccggcgcgGGGCguugccGGCCCG-GCCcggCCCCg -3' miRNA: 3'- -GAGGCGG------------CCCG------CCGGGCgCGGa--GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 4911 | 0.72 | 0.159211 |
Target: 5'- -gCCGCCGGucgucuccgccGCGGCCCGgagaCGUC-CCCCg -3' miRNA: 3'- gaGGCGGCC-----------CGCCGGGC----GCGGaGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 135569 | 0.72 | 0.159211 |
Target: 5'- uUCgGCCaacGGCauacGCCCGCGCCUCgCCCc -3' miRNA: 3'- gAGgCGGc--CCGc---CGGGCGCGGAG-GGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 51954 | 0.72 | 0.159211 |
Target: 5'- gCUCaGCgCGGGagGGgCCGCGCCcCCCCa -3' miRNA: 3'- -GAGgCG-GCCCg-CCgGGCGCGGaGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 70558 | 0.72 | 0.162567 |
Target: 5'- -gCCGCCGGGCugcgcaccacggcGGCCCuggggccgguGCGCgUCCgCCa -3' miRNA: 3'- gaGGCGGCCCG-------------CCGGG----------CGCGgAGG-GG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 82184 | 0.72 | 0.162567 |
Target: 5'- uUCCGCCGcagcGGCGGCagugccgccuucuCCGgGCCUugCCCCc -3' miRNA: 3'- gAGGCGGC----CCGCCG-------------GGCgCGGA--GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 132144 | 0.72 | 0.162944 |
Target: 5'- -gCCGCCGGG-GGCCggcgggcgggGCGCCcCCCCc -3' miRNA: 3'- gaGGCGGCCCgCCGGg---------CGCGGaGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 109607 | 0.72 | 0.162944 |
Target: 5'- --aCGCCGaguuucucGGCGGCCgCGCGCUaaccgCCCCg -3' miRNA: 3'- gagGCGGC--------CCGCCGG-GCGCGGa----GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 145542 | 0.72 | 0.162944 |
Target: 5'- -cCCGCCcGGCcGCCCGCGUCgcgccggcgCCCCc -3' miRNA: 3'- gaGGCGGcCCGcCGGGCGCGGa--------GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 75961 | 0.71 | 0.165221 |
Target: 5'- --gCGCCGGGCcccugaccgugauGCCCGUGCCcgccgCCCCg -3' miRNA: 3'- gagGCGGCCCGc------------CGGGCGCGGa----GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 122624 | 0.71 | 0.170646 |
Target: 5'- aUCCggGCCGcgcuccaaGGCGGCCCGCGCauCUUCCa -3' miRNA: 3'- gAGG--CGGC--------CCGCCGGGCGCG--GAGGGg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 109119 | 0.71 | 0.170646 |
Target: 5'- cCUCCGgCGGGUGGCCgGCuaC-CCCg -3' miRNA: 3'- -GAGGCgGCCCGCCGGgCGcgGaGGGg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 1213 | 0.71 | 0.170646 |
Target: 5'- gUCC-CCGcGCGGCCCGCGgCCgacgCCCa -3' miRNA: 3'- gAGGcGGCcCGCCGGGCGC-GGa---GGGg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 31555 | 0.71 | 0.170646 |
Target: 5'- gUCUGCCacagucgucgGGGCGcGCCgCGCGCC-CCCg -3' miRNA: 3'- gAGGCGG----------CCCGC-CGG-GCGCGGaGGGg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 146598 | 0.71 | 0.170646 |
Target: 5'- -gCCGCgGcgccaGCGGCCCaCGCCUCCCg -3' miRNA: 3'- gaGGCGgCc----CGCCGGGcGCGGAGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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