Results 41 - 60 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5124 | 5' | -69 | NC_001798.1 | + | 16222 | 0.69 | 0.233629 |
Target: 5'- -gCCGCCuguggggGGGCGGUggggCCGgGgcCCUCCCCg -3' miRNA: 3'- gaGGCGG-------CCCGCCG----GGCgC--GGAGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 18304 | 0.66 | 0.386606 |
Target: 5'- -cUCGCCGGGaaGGCCgGgGCCguguuugUCUCCg -3' miRNA: 3'- gaGGCGGCCCg-CCGGgCgCGG-------AGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 20253 | 0.71 | 0.188744 |
Target: 5'- uUCCGCCcgagaucugcagcaGGCGGCCCcacguGCGCggCCCCa -3' miRNA: 3'- gAGGCGGc-------------CCGCCGGG-----CGCGgaGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 20479 | 0.66 | 0.395019 |
Target: 5'- --gCGCCGGuGCGcGUgCGCGa-UCCCCg -3' miRNA: 3'- gagGCGGCC-CGC-CGgGCGCggAGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 21716 | 0.68 | 0.290843 |
Target: 5'- uCUCCGCCGcGCaGCCgGUGUg-CCCCu -3' miRNA: 3'- -GAGGCGGCcCGcCGGgCGCGgaGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 21808 | 0.67 | 0.33659 |
Target: 5'- -cCCGCCucgGGGCGgaGCCCGCGggaugaCgcgggCCCCg -3' miRNA: 3'- gaGGCGG---CCCGC--CGGGCGCg-----Ga----GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 23600 | 0.67 | 0.33659 |
Target: 5'- -cCCGCCcaGGGcCGaGCCCGCcccgGCCcggacCCCCg -3' miRNA: 3'- gaGGCGG--CCC-GC-CGGGCG----CGGa----GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 23712 | 0.68 | 0.271023 |
Target: 5'- -aCgGCCGGGCGGCCCcggcgggucgaGCuggacgccgacgcgGCCUCCg- -3' miRNA: 3'- gaGgCGGCCCGCCGGG-----------CG--------------CGGAGGgg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 24123 | 0.67 | 0.323003 |
Target: 5'- uCUCCGgCaGcGUGGCgCGgGCCgugCCCCa -3' miRNA: 3'- -GAGGCgGcC-CGCCGgGCgCGGa--GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 24375 | 0.68 | 0.278698 |
Target: 5'- -cCCG-CGGGaaGCCCGcCGCCgccgccgCCCCg -3' miRNA: 3'- gaGGCgGCCCgcCGGGC-GCGGa------GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 24479 | 0.68 | 0.284719 |
Target: 5'- -gCCGCCcugGGGCGccugaGCgCCGCGCCcgCCuCCg -3' miRNA: 3'- gaGGCGG---CCCGC-----CG-GGCGCGGa-GG-GG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 24674 | 0.68 | 0.296441 |
Target: 5'- --gUGCCGGGgcuggccggagccCGGCCCGcCGCgC-CCCCg -3' miRNA: 3'- gagGCGGCCC-------------GCCGGGC-GCG-GaGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 24722 | 0.66 | 0.364268 |
Target: 5'- -cCCGCgGGcGCGGCcgccccgCCGCacGCCgacgcgCCCCg -3' miRNA: 3'- gaGGCGgCC-CGCCG-------GGCG--CGGa-----GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 24857 | 0.66 | 0.387366 |
Target: 5'- -gCCGCCGuGGCcGCCgugCGCGCCgugagCCUg -3' miRNA: 3'- gaGGCGGC-CCGcCGG---GCGCGGa----GGGg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 24913 | 0.68 | 0.278698 |
Target: 5'- -gCUGCCGcGGa-GCCCGCGCCUgCUg -3' miRNA: 3'- gaGGCGGC-CCgcCGGGCGCGGAgGGg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 25092 | 0.88 | 0.009371 |
Target: 5'- -gCCGCCGGGCGGCgccCCGCGCC-CCCCg -3' miRNA: 3'- gaGGCGGCCCGCCG---GGCGCGGaGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 25159 | 0.69 | 0.25011 |
Target: 5'- cCUCC-CgCGGG-GG-CCGCGCC-CCCCg -3' miRNA: 3'- -GAGGcG-GCCCgCCgGGCGCGGaGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 25194 | 0.68 | 0.272779 |
Target: 5'- -gCCGCCGccGCGGCcgCCGCGCC-CCgCg -3' miRNA: 3'- gaGGCGGCc-CGCCG--GGCGCGGaGGgG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 25254 | 0.74 | 0.104087 |
Target: 5'- -cCCGCaGGGCGGCUgGCGCCgccagCCgCCg -3' miRNA: 3'- gaGGCGgCCCGCCGGgCGCGGa----GG-GG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 25449 | 0.69 | 0.244691 |
Target: 5'- -cCCGCCccccggcGGCGcGCCCGcCGCCUUcggCCCg -3' miRNA: 3'- gaGGCGGc------CCGC-CGGGC-GCGGAG---GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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