miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 5' -69 NC_001798.1 + 16222 0.69 0.233629
Target:  5'- -gCCGCCuguggggGGGCGGUggggCCGgGgcCCUCCCCg -3'
miRNA:   3'- gaGGCGG-------CCCGCCG----GGCgC--GGAGGGG- -5'
5124 5' -69 NC_001798.1 + 18304 0.66 0.386606
Target:  5'- -cUCGCCGGGaaGGCCgGgGCCguguuugUCUCCg -3'
miRNA:   3'- gaGGCGGCCCg-CCGGgCgCGG-------AGGGG- -5'
5124 5' -69 NC_001798.1 + 20253 0.71 0.188744
Target:  5'- uUCCGCCcgagaucugcagcaGGCGGCCCcacguGCGCggCCCCa -3'
miRNA:   3'- gAGGCGGc-------------CCGCCGGG-----CGCGgaGGGG- -5'
5124 5' -69 NC_001798.1 + 20479 0.66 0.395019
Target:  5'- --gCGCCGGuGCGcGUgCGCGa-UCCCCg -3'
miRNA:   3'- gagGCGGCC-CGC-CGgGCGCggAGGGG- -5'
5124 5' -69 NC_001798.1 + 21716 0.68 0.290843
Target:  5'- uCUCCGCCGcGCaGCCgGUGUg-CCCCu -3'
miRNA:   3'- -GAGGCGGCcCGcCGGgCGCGgaGGGG- -5'
5124 5' -69 NC_001798.1 + 21808 0.67 0.33659
Target:  5'- -cCCGCCucgGGGCGgaGCCCGCGggaugaCgcgggCCCCg -3'
miRNA:   3'- gaGGCGG---CCCGC--CGGGCGCg-----Ga----GGGG- -5'
5124 5' -69 NC_001798.1 + 23600 0.67 0.33659
Target:  5'- -cCCGCCcaGGGcCGaGCCCGCcccgGCCcggacCCCCg -3'
miRNA:   3'- gaGGCGG--CCC-GC-CGGGCG----CGGa----GGGG- -5'
5124 5' -69 NC_001798.1 + 23712 0.68 0.271023
Target:  5'- -aCgGCCGGGCGGCCCcggcgggucgaGCuggacgccgacgcgGCCUCCg- -3'
miRNA:   3'- gaGgCGGCCCGCCGGG-----------CG--------------CGGAGGgg -5'
5124 5' -69 NC_001798.1 + 24123 0.67 0.323003
Target:  5'- uCUCCGgCaGcGUGGCgCGgGCCgugCCCCa -3'
miRNA:   3'- -GAGGCgGcC-CGCCGgGCgCGGa--GGGG- -5'
5124 5' -69 NC_001798.1 + 24375 0.68 0.278698
Target:  5'- -cCCG-CGGGaaGCCCGcCGCCgccgccgCCCCg -3'
miRNA:   3'- gaGGCgGCCCgcCGGGC-GCGGa------GGGG- -5'
5124 5' -69 NC_001798.1 + 24479 0.68 0.284719
Target:  5'- -gCCGCCcugGGGCGccugaGCgCCGCGCCcgCCuCCg -3'
miRNA:   3'- gaGGCGG---CCCGC-----CG-GGCGCGGa-GG-GG- -5'
5124 5' -69 NC_001798.1 + 24674 0.68 0.296441
Target:  5'- --gUGCCGGGgcuggccggagccCGGCCCGcCGCgC-CCCCg -3'
miRNA:   3'- gagGCGGCCC-------------GCCGGGC-GCG-GaGGGG- -5'
5124 5' -69 NC_001798.1 + 24722 0.66 0.364268
Target:  5'- -cCCGCgGGcGCGGCcgccccgCCGCacGCCgacgcgCCCCg -3'
miRNA:   3'- gaGGCGgCC-CGCCG-------GGCG--CGGa-----GGGG- -5'
5124 5' -69 NC_001798.1 + 24857 0.66 0.387366
Target:  5'- -gCCGCCGuGGCcGCCgugCGCGCCgugagCCUg -3'
miRNA:   3'- gaGGCGGC-CCGcCGG---GCGCGGa----GGGg -5'
5124 5' -69 NC_001798.1 + 24913 0.68 0.278698
Target:  5'- -gCUGCCGcGGa-GCCCGCGCCUgCUg -3'
miRNA:   3'- gaGGCGGC-CCgcCGGGCGCGGAgGGg -5'
5124 5' -69 NC_001798.1 + 25092 0.88 0.009371
Target:  5'- -gCCGCCGGGCGGCgccCCGCGCC-CCCCg -3'
miRNA:   3'- gaGGCGGCCCGCCG---GGCGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 25159 0.69 0.25011
Target:  5'- cCUCC-CgCGGG-GG-CCGCGCC-CCCCg -3'
miRNA:   3'- -GAGGcG-GCCCgCCgGGCGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 25194 0.68 0.272779
Target:  5'- -gCCGCCGccGCGGCcgCCGCGCC-CCgCg -3'
miRNA:   3'- gaGGCGGCc-CGCCG--GGCGCGGaGGgG- -5'
5124 5' -69 NC_001798.1 + 25254 0.74 0.104087
Target:  5'- -cCCGCaGGGCGGCUgGCGCCgccagCCgCCg -3'
miRNA:   3'- gaGGCGgCCCGCCGGgCGCGGa----GG-GG- -5'
5124 5' -69 NC_001798.1 + 25449 0.69 0.244691
Target:  5'- -cCCGCCccccggcGGCGcGCCCGcCGCCUUcggCCCg -3'
miRNA:   3'- gaGGCGGc------CCGC-CGGGC-GCGGAG---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.