miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 5' -69 NC_001798.1 + 4042 0.66 0.395019
Target:  5'- -aCCGCCGcGCgGGCCCGgCGgCgCUCCa -3'
miRNA:   3'- gaGGCGGCcCG-CCGGGC-GCgGaGGGG- -5'
5124 5' -69 NC_001798.1 + 11038 0.66 0.395019
Target:  5'- cCUCCccCCGGGCcccGCCCauccauuaccCGCCUCCCa -3'
miRNA:   3'- -GAGGc-GGCCCGc--CGGGc---------GCGGAGGGg -5'
5124 5' -69 NC_001798.1 + 20479 0.66 0.395019
Target:  5'- --gCGCCGGuGCGcGUgCGCGa-UCCCCg -3'
miRNA:   3'- gagGCGGCC-CGC-CGgGCGCggAGGGG- -5'
5124 5' -69 NC_001798.1 + 70425 0.66 0.395019
Target:  5'- cCUCC-CCGGGCugcuGGUgcaCCGCauggcggugGCgCUCCCCg -3'
miRNA:   3'- -GAGGcGGCCCG----CCG---GGCG---------CG-GAGGGG- -5'
5124 5' -69 NC_001798.1 + 31290 0.66 0.398108
Target:  5'- -cCUGCCGucGCGGCCguCGUGCCgagaguggccucucuUCCCCc -3'
miRNA:   3'- gaGGCGGCc-CGCCGG--GCGCGG---------------AGGGG- -5'
5124 5' -69 NC_001798.1 + 3886 0.66 0.387366
Target:  5'- --gCGCCccggGGGCGGggggccggcCCCGgGCCacggcUCCCCg -3'
miRNA:   3'- gagGCGG----CCCGCC---------GGGCgCGG-----AGGGG- -5'
5124 5' -69 NC_001798.1 + 152546 0.66 0.387366
Target:  5'- cCUCU-CgGGGCGGCCC-CGUC-CCCg -3'
miRNA:   3'- -GAGGcGgCCCGCCGGGcGCGGaGGGg -5'
5124 5' -69 NC_001798.1 + 35624 0.66 0.37981
Target:  5'- aCUCUGCCcGGCucGCCC-CGUCcCCCCu -3'
miRNA:   3'- -GAGGCGGcCCGc-CGGGcGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 28391 0.66 0.37981
Target:  5'- -gCCGCgCGGGaaGGUa--CGCCUCCCCu -3'
miRNA:   3'- gaGGCG-GCCCg-CCGggcGCGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 30821 0.66 0.37981
Target:  5'- -cCCG-CGGaCGGCCC-CGCgCUCCCUn -3'
miRNA:   3'- gaGGCgGCCcGCCGGGcGCG-GAGGGG- -5'
5124 5' -69 NC_001798.1 + 71847 0.66 0.37981
Target:  5'- -cCCGUCGGGCGccuaGCCa-CGCC-CCCUc -3'
miRNA:   3'- gaGGCGGCCCGC----CGGgcGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 94396 0.66 0.37981
Target:  5'- gUCgCGCUcucggaggGGGCGGCuauCUGCGCC-CCCa -3'
miRNA:   3'- gAG-GCGG--------CCCGCCG---GGCGCGGaGGGg -5'
5124 5' -69 NC_001798.1 + 153836 0.66 0.37981
Target:  5'- --gUGCgGGGCcuCCgGCGCCUUCCCc -3'
miRNA:   3'- gagGCGgCCCGccGGgCGCGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 58894 0.66 0.37981
Target:  5'- -aCCcCCGGa-GGCgCGCcgGCCUCCCCg -3'
miRNA:   3'- gaGGcGGCCcgCCGgGCG--CGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 113628 0.66 0.37981
Target:  5'- -aUCGCCuGcGCGGCCgGCGCCgCCa- -3'
miRNA:   3'- gaGGCGGcC-CGCCGGgCGCGGaGGgg -5'
5124 5' -69 NC_001798.1 + 18304 0.66 0.386606
Target:  5'- -cUCGCCGGGaaGGCCgGgGCCguguuugUCUCCg -3'
miRNA:   3'- gaGGCGGCCCg-CCGGgCgCGG-------AGGGG- -5'
5124 5' -69 NC_001798.1 + 15130 0.66 0.387366
Target:  5'- gUCC-UCGGGgGGUUCGC-CgUCCCCg -3'
miRNA:   3'- gAGGcGGCCCgCCGGGCGcGgAGGGG- -5'
5124 5' -69 NC_001798.1 + 24857 0.66 0.387366
Target:  5'- -gCCGCCGuGGCcGCCgugCGCGCCgugagCCUg -3'
miRNA:   3'- gaGGCGGC-CCGcCGG---GCGCGGa----GGGg -5'
5124 5' -69 NC_001798.1 + 46581 0.66 0.387366
Target:  5'- -gCC-CCGGGgGcaaaCCCGCGCgUCCCg -3'
miRNA:   3'- gaGGcGGCCCgCc---GGGCGCGgAGGGg -5'
5124 5' -69 NC_001798.1 + 128022 0.66 0.387366
Target:  5'- cCUCuCGCCGGGgGGCgCacaCGCCaucgaCCCg -3'
miRNA:   3'- -GAG-GCGGCCCgCCGgGc--GCGGag---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.