Results 41 - 60 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5124 | 5' | -69 | NC_001798.1 | + | 48118 | 0.66 | 0.387366 |
Target: 5'- -cCCcCCGGGUGGCCggguucaacaagCGCGUCUUCUg -3' miRNA: 3'- gaGGcGGCCCGCCGG------------GCGCGGAGGGg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 102222 | 0.66 | 0.387366 |
Target: 5'- -gUCGaCCGGGCgcGGCUcggggCGgGCCUCgCCCg -3' miRNA: 3'- gaGGC-GGCCCG--CCGG-----GCgCGGAG-GGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 85361 | 0.66 | 0.387366 |
Target: 5'- cCUUCGCCGcGGCGuCCgucgacaccuuCGCGCUggaccgCCCCu -3' miRNA: 3'- -GAGGCGGC-CCGCcGG-----------GCGCGGa-----GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 74966 | 0.66 | 0.387366 |
Target: 5'- aUCUGaccuCGGGCgagaGGCCCGCcCCcaaggCCCCg -3' miRNA: 3'- gAGGCg---GCCCG----CCGGGCGcGGa----GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 43262 | 0.66 | 0.387366 |
Target: 5'- -aUCGCCGGG-GGCgUCGUGCCcugcugCUCCg -3' miRNA: 3'- gaGGCGGCCCgCCG-GGCGCGGa-----GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 3886 | 0.66 | 0.387366 |
Target: 5'- --gCGCCccggGGGCGGggggccggcCCCGgGCCacggcUCCCCg -3' miRNA: 3'- gagGCGG----CCCGCC---------GGGCgCGG-----AGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 126415 | 0.66 | 0.398108 |
Target: 5'- gUCCcCCGaGGCccccGGCCCugcggccaagcuaagGCGCCcgCCCCu -3' miRNA: 3'- gAGGcGGC-CCG----CCGGG---------------CGCGGa-GGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 128022 | 0.66 | 0.387366 |
Target: 5'- cCUCuCGCCGGGgGGCgCacaCGCCaucgaCCCg -3' miRNA: 3'- -GAG-GCGGCCCgCCGgGc--GCGGag---GGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 46581 | 0.66 | 0.387366 |
Target: 5'- -gCC-CCGGGgGcaaaCCCGCGCgUCCCg -3' miRNA: 3'- gaGGcGGCCCgCc---GGGCGCGgAGGGg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 24857 | 0.66 | 0.387366 |
Target: 5'- -gCCGCCGuGGCcGCCgugCGCGCCgugagCCUg -3' miRNA: 3'- gaGGCGGC-CCGcCGG---GCGCGGa----GGGg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 15130 | 0.66 | 0.387366 |
Target: 5'- gUCC-UCGGGgGGUUCGC-CgUCCCCg -3' miRNA: 3'- gAGGcGGCCCgCCGGGCGcGgAGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 18304 | 0.66 | 0.386606 |
Target: 5'- -cUCGCCGGGaaGGCCgGgGCCguguuugUCUCCg -3' miRNA: 3'- gaGGCGGCCCg-CCGGgCgCGG-------AGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 113628 | 0.66 | 0.37981 |
Target: 5'- -aUCGCCuGcGCGGCCgGCGCCgCCa- -3' miRNA: 3'- gaGGCGGcC-CGCCGGgCGCGGaGGgg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 58894 | 0.66 | 0.37981 |
Target: 5'- -aCCcCCGGa-GGCgCGCcgGCCUCCCCg -3' miRNA: 3'- gaGGcGGCCcgCCGgGCG--CGGAGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 153836 | 0.66 | 0.37981 |
Target: 5'- --gUGCgGGGCcuCCgGCGCCUUCCCc -3' miRNA: 3'- gagGCGgCCCGccGGgCGCGGAGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 94396 | 0.66 | 0.37981 |
Target: 5'- gUCgCGCUcucggaggGGGCGGCuauCUGCGCC-CCCa -3' miRNA: 3'- gAG-GCGG--------CCCGCCG---GGCGCGGaGGGg -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 71847 | 0.66 | 0.37981 |
Target: 5'- -cCCGUCGGGCGccuaGCCa-CGCC-CCCUc -3' miRNA: 3'- gaGGCGGCCCGC----CGGgcGCGGaGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 30821 | 0.66 | 0.37981 |
Target: 5'- -cCCG-CGGaCGGCCC-CGCgCUCCCUn -3' miRNA: 3'- gaGGCgGCCcGCCGGGcGCG-GAGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 28391 | 0.66 | 0.37981 |
Target: 5'- -gCCGCgCGGGaaGGUa--CGCCUCCCCu -3' miRNA: 3'- gaGGCG-GCCCg-CCGggcGCGGAGGGG- -5' |
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5124 | 5' | -69 | NC_001798.1 | + | 35624 | 0.66 | 0.37981 |
Target: 5'- aCUCUGCCcGGCucGCCC-CGUCcCCCCu -3' miRNA: 3'- -GAGGCGGcCCGc-CGGGcGCGGaGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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