miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 5' -69 NC_001798.1 + 31290 0.66 0.398108
Target:  5'- -cCUGCCGucGCGGCCguCGUGCCgagaguggccucucuUCCCCc -3'
miRNA:   3'- gaGGCGGCc-CGCCGG--GCGCGG---------------AGGGG- -5'
5124 5' -69 NC_001798.1 + 126415 0.66 0.398108
Target:  5'- gUCCcCCGaGGCccccGGCCCugcggccaagcuaagGCGCCcgCCCCu -3'
miRNA:   3'- gAGGcGGC-CCG----CCGGG---------------CGCGGa-GGGG- -5'
5124 5' -69 NC_001798.1 + 74966 0.66 0.387366
Target:  5'- aUCUGaccuCGGGCgagaGGCCCGCcCCcaaggCCCCg -3'
miRNA:   3'- gAGGCg---GCCCG----CCGGGCGcGGa----GGGG- -5'
5124 5' -69 NC_001798.1 + 43262 0.66 0.387366
Target:  5'- -aUCGCCGGG-GGCgUCGUGCCcugcugCUCCg -3'
miRNA:   3'- gaGGCGGCCCgCCG-GGCGCGGa-----GGGG- -5'
5124 5' -69 NC_001798.1 + 3886 0.66 0.387366
Target:  5'- --gCGCCccggGGGCGGggggccggcCCCGgGCCacggcUCCCCg -3'
miRNA:   3'- gagGCGG----CCCGCC---------GGGCgCGG-----AGGGG- -5'
5124 5' -69 NC_001798.1 + 30821 0.66 0.37981
Target:  5'- -cCCG-CGGaCGGCCC-CGCgCUCCCUn -3'
miRNA:   3'- gaGGCgGCCcGCCGGGcGCG-GAGGGG- -5'
5124 5' -69 NC_001798.1 + 71847 0.66 0.37981
Target:  5'- -cCCGUCGGGCGccuaGCCa-CGCC-CCCUc -3'
miRNA:   3'- gaGGCGGCCCGC----CGGgcGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 94396 0.66 0.37981
Target:  5'- gUCgCGCUcucggaggGGGCGGCuauCUGCGCC-CCCa -3'
miRNA:   3'- gAG-GCGG--------CCCGCCG---GGCGCGGaGGGg -5'
5124 5' -69 NC_001798.1 + 153836 0.66 0.37981
Target:  5'- --gUGCgGGGCcuCCgGCGCCUUCCCc -3'
miRNA:   3'- gagGCGgCCCGccGGgCGCGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 58894 0.66 0.37981
Target:  5'- -aCCcCCGGa-GGCgCGCcgGCCUCCCCg -3'
miRNA:   3'- gaGGcGGCCcgCCGgGCG--CGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 113628 0.66 0.37981
Target:  5'- -aUCGCCuGcGCGGCCgGCGCCgCCa- -3'
miRNA:   3'- gaGGCGGcC-CGCCGGgCGCGGaGGgg -5'
5124 5' -69 NC_001798.1 + 18304 0.66 0.386606
Target:  5'- -cUCGCCGGGaaGGCCgGgGCCguguuugUCUCCg -3'
miRNA:   3'- gaGGCGGCCCg-CCGGgCgCGG-------AGGGG- -5'
5124 5' -69 NC_001798.1 + 152546 0.66 0.387366
Target:  5'- cCUCU-CgGGGCGGCCC-CGUC-CCCg -3'
miRNA:   3'- -GAGGcGgCCCGCCGGGcGCGGaGGGg -5'
5124 5' -69 NC_001798.1 + 128022 0.66 0.387366
Target:  5'- cCUCuCGCCGGGgGGCgCacaCGCCaucgaCCCg -3'
miRNA:   3'- -GAG-GCGGCCCgCCGgGc--GCGGag---GGG- -5'
5124 5' -69 NC_001798.1 + 46581 0.66 0.387366
Target:  5'- -gCC-CCGGGgGcaaaCCCGCGCgUCCCg -3'
miRNA:   3'- gaGGcGGCCCgCc---GGGCGCGgAGGGg -5'
5124 5' -69 NC_001798.1 + 24857 0.66 0.387366
Target:  5'- -gCCGCCGuGGCcGCCgugCGCGCCgugagCCUg -3'
miRNA:   3'- gaGGCGGC-CCGcCGG---GCGCGGa----GGGg -5'
5124 5' -69 NC_001798.1 + 15130 0.66 0.387366
Target:  5'- gUCC-UCGGGgGGUUCGC-CgUCCCCg -3'
miRNA:   3'- gAGGcGGCCCgCCGGGCGcGgAGGGG- -5'
5124 5' -69 NC_001798.1 + 131383 0.67 0.343539
Target:  5'- aUCCcCUGGG-GGCCCG-GCgUCCCa -3'
miRNA:   3'- gAGGcGGCCCgCCGGGCgCGgAGGGg -5'
5124 5' -69 NC_001798.1 + 55023 0.67 0.343539
Target:  5'- -cCUGCCGGGagacGCCC-CGgaCUCCCCg -3'
miRNA:   3'- gaGGCGGCCCgc--CGGGcGCg-GAGGGG- -5'
5124 5' -69 NC_001798.1 + 9609 0.67 0.343539
Target:  5'- -cCCGa-GGGCGGCCagcaacaGgGCCgCCCCc -3'
miRNA:   3'- gaGGCggCCCGCCGGg------CgCGGaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.