miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 5' -69 NC_001798.1 + 130230 0.73 0.131102
Target:  5'- uUCCGCguagcccgggucucCGGGCGGCCCGCcacGCCUagaaCCg -3'
miRNA:   3'- gAGGCG--------------GCCCGCCGGGCG---CGGAgg--GG- -5'
5124 5' -69 NC_001798.1 + 5387 0.72 0.158842
Target:  5'- gUCCGUgGcGGCGGCCCguuggucGCGCCgCCgCCg -3'
miRNA:   3'- gAGGCGgC-CCGCCGGG-------CGCGGaGG-GG- -5'
5124 5' -69 NC_001798.1 + 51954 0.72 0.159211
Target:  5'- gCUCaGCgCGGGagGGgCCGCGCCcCCCCa -3'
miRNA:   3'- -GAGgCG-GCCCg-CCgGGCGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 25578 0.72 0.158107
Target:  5'- -gCUGCCGGGCgaggaccuggccgcGGgCCGCGCCgggggcgggCCCCc -3'
miRNA:   3'- gaGGCGGCCCG--------------CCgGGCGCGGa--------GGGG- -5'
5124 5' -69 NC_001798.1 + 82184 0.72 0.162567
Target:  5'- uUCCGCCGcagcGGCGGCagugccgccuucuCCGgGCCUugCCCCc -3'
miRNA:   3'- gAGGCGGC----CCGCCG-------------GGCgCGGA--GGGG- -5'
5124 5' -69 NC_001798.1 + 35529 0.72 0.159211
Target:  5'- uCUCCGCCgcggccggcgcgGGGCguugccGGCCCG-GCCcggCCCCg -3'
miRNA:   3'- -GAGGCGG------------CCCG------CCGGGCgCGGa--GGGG- -5'
5124 5' -69 NC_001798.1 + 135569 0.72 0.159211
Target:  5'- uUCgGCCaacGGCauacGCCCGCGCCUCgCCCc -3'
miRNA:   3'- gAGgCGGc--CCGc---CGGGCGCGGAG-GGG- -5'
5124 5' -69 NC_001798.1 + 145542 0.72 0.162944
Target:  5'- -cCCGCCcGGCcGCCCGCGUCgcgccggcgCCCCc -3'
miRNA:   3'- gaGGCGGcCCGcCGGGCGCGGa--------GGGG- -5'
5124 5' -69 NC_001798.1 + 109607 0.72 0.162944
Target:  5'- --aCGCCGaguuucucGGCGGCCgCGCGCUaaccgCCCCg -3'
miRNA:   3'- gagGCGGC--------CCGCCGG-GCGCGGa----GGGG- -5'
5124 5' -69 NC_001798.1 + 29033 0.72 0.145042
Target:  5'- aCUCCGCCccGGCGaccgcCCCGCGCCggcUUCCCg -3'
miRNA:   3'- -GAGGCGGc-CCGCc----GGGCGCGG---AGGGG- -5'
5124 5' -69 NC_001798.1 + 4911 0.72 0.159211
Target:  5'- -gCCGCCGGucgucuccgccGCGGCCCGgagaCGUC-CCCCg -3'
miRNA:   3'- gaGGCGGCC-----------CGCCGGGC----GCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 32774 0.72 0.151977
Target:  5'- uCUCgggaGCaGGGCGcGCCCGCGCCggccggcgacgCCCCc -3'
miRNA:   3'- -GAGg---CGgCCCGC-CGGGCGCGGa----------GGGG- -5'
5124 5' -69 NC_001798.1 + 70558 0.72 0.162567
Target:  5'- -gCCGCCGGGCugcgcaccacggcGGCCCuggggccgguGCGCgUCCgCCa -3'
miRNA:   3'- gaGGCGGCCCG-------------CCGGG----------CGCGgAGG-GG- -5'
5124 5' -69 NC_001798.1 + 132144 0.72 0.162944
Target:  5'- -gCCGCCGGG-GGCCggcgggcgggGCGCCcCCCCc -3'
miRNA:   3'- gaGGCGGCCCgCCGGg---------CGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 127945 0.71 0.187032
Target:  5'- -gCC-CCGGGCgaaaaGGCCCGgccCGCgUCCCCg -3'
miRNA:   3'- gaGGcGGCCCG-----CCGGGC---GCGgAGGGG- -5'
5124 5' -69 NC_001798.1 + 20253 0.71 0.188744
Target:  5'- uUCCGCCcgagaucugcagcaGGCGGCCCcacguGCGCggCCCCa -3'
miRNA:   3'- gAGGCGGc-------------CCGCCGGG-----CGCGgaGGGG- -5'
5124 5' -69 NC_001798.1 + 2980 0.71 0.191339
Target:  5'- -gCgGCgGGGCGGCCgGC-CCgcgggCCCCg -3'
miRNA:   3'- gaGgCGgCCCGCCGGgCGcGGa----GGGG- -5'
5124 5' -69 NC_001798.1 + 50407 0.71 0.18281
Target:  5'- gUgCGaCCGGGCGGCgCGCcCCcCCCCc -3'
miRNA:   3'- gAgGC-GGCCCGCCGgGCGcGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 87717 0.71 0.18281
Target:  5'- cCUCCGCCGuagcGcCGGCCCcCGCCggCCCg -3'
miRNA:   3'- -GAGGCGGCc---C-GCCGGGcGCGGagGGG- -5'
5124 5' -69 NC_001798.1 + 102382 0.71 0.187032
Target:  5'- -cCCGCCuGGCGGUCgGCGgCgauggCCCCc -3'
miRNA:   3'- gaGGCGGcCCGCCGGgCGCgGa----GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.