miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5125 3' -53 NC_001798.1 + 137653 1.11 0.004248
Target:  5'- aAGCACGUACUCGAAAUACGGGGCCACg -3'
miRNA:   3'- -UCGUGCAUGAGCUUUAUGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 149438 0.81 0.321133
Target:  5'- cGCGCGUGCUCGGggagcagGGUGCggcggcuccacgcgGGGGCCGCg -3'
miRNA:   3'- uCGUGCAUGAGCU-------UUAUG--------------CCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 22344 0.79 0.405862
Target:  5'- cGCGCGgGCgUCGGG--GCGGGGCCGCg -3'
miRNA:   3'- uCGUGCaUG-AGCUUuaUGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 96973 0.76 0.529309
Target:  5'- uGGCGCGgaccGCggCGGGcgGCGGGGCCAg -3'
miRNA:   3'- -UCGUGCa---UGa-GCUUuaUGCCCCGGUg -5'
5125 3' -53 NC_001798.1 + 17223 0.74 0.664004
Target:  5'- cGCACGgccgccuUUCGggGUcgcGCGGGGCCGa -3'
miRNA:   3'- uCGUGCau-----GAGCuuUA---UGCCCCGGUg -5'
5125 3' -53 NC_001798.1 + 27151 0.73 0.684783
Target:  5'- gGGCGCGggagggaggggcUGCUgCGAGcu-CGGGGCCGCg -3'
miRNA:   3'- -UCGUGC------------AUGA-GCUUuauGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 104577 0.73 0.684783
Target:  5'- uGCugGUGuCUCGggGaacgucgccCGGGGCCGCc -3'
miRNA:   3'- uCGugCAU-GAGCuuUau-------GCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 2255 0.73 0.715585
Target:  5'- gGGCGCGccGC-CGggGgGCGGGGCgGCg -3'
miRNA:   3'- -UCGUGCa-UGaGCuuUaUGCCCCGgUG- -5'
5125 3' -53 NC_001798.1 + 26350 0.73 0.735765
Target:  5'- uGCGCGgcgGCccggCGGAGcUGCGcGGGCCGCg -3'
miRNA:   3'- uCGUGCa--UGa---GCUUU-AUGC-CCCGGUG- -5'
5125 3' -53 NC_001798.1 + 64093 0.72 0.745718
Target:  5'- gGGCAC--AC-CGGAAU-CGGGGCCGCc -3'
miRNA:   3'- -UCGUGcaUGaGCUUUAuGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 38939 0.72 0.765303
Target:  5'- aGGCGCGUGg-CGAGGUuuuccagcACGGcGGCCGCc -3'
miRNA:   3'- -UCGUGCAUgaGCUUUA--------UGCC-CCGGUG- -5'
5125 3' -53 NC_001798.1 + 75406 0.72 0.765303
Target:  5'- gAGCGCGUcCUCGccuuuuugaucGAGaACGGGGcCCGCa -3'
miRNA:   3'- -UCGUGCAuGAGC-----------UUUaUGCCCC-GGUG- -5'
5125 3' -53 NC_001798.1 + 29483 0.72 0.765303
Target:  5'- cGGUugGUcCcCGggG-ACGGGGCCGCc -3'
miRNA:   3'- -UCGugCAuGaGCuuUaUGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 95307 0.72 0.765303
Target:  5'- uGCGCGgcgucgaguCUCGggG-GCGGGGcCCACg -3'
miRNA:   3'- uCGUGCau-------GAGCuuUaUGCCCC-GGUG- -5'
5125 3' -53 NC_001798.1 + 123198 0.72 0.774914
Target:  5'- cGCGCGUGCcgUCGGAcuccgguucuGUcGCGGGGCgGCu -3'
miRNA:   3'- uCGUGCAUG--AGCUU----------UA-UGCCCCGgUG- -5'
5125 3' -53 NC_001798.1 + 3969 0.72 0.784393
Target:  5'- aGGcCGCGUcggcguccaGCUCGAccgcCGGGGCCGCc -3'
miRNA:   3'- -UC-GUGCA---------UGAGCUuuauGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 153669 0.72 0.784393
Target:  5'- cGGCGCGUccGCgggCGggGacGCgGGGGCCGCc -3'
miRNA:   3'- -UCGUGCA--UGa--GCuuUa-UG-CCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 53602 0.71 0.802911
Target:  5'- uGCugGUGCgCGccccguucAAGaGCGGGGCCGCc -3'
miRNA:   3'- uCGugCAUGaGC--------UUUaUGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 75173 0.71 0.802911
Target:  5'- cGUcCGUGCUCGAGAcGCugGGGGCC-Cg -3'
miRNA:   3'- uCGuGCAUGAGCUUUaUG--CCCCGGuG- -5'
5125 3' -53 NC_001798.1 + 132824 0.71 0.827736
Target:  5'- uGCACGUGCgguuc---UGGGGCCACg -3'
miRNA:   3'- uCGUGCAUGagcuuuauGCCCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.