miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5125 3' -53 NC_001798.1 + 2255 0.73 0.715585
Target:  5'- gGGCGCGccGC-CGggGgGCGGGGCgGCg -3'
miRNA:   3'- -UCGUGCa-UGaGCuuUaUGCCCCGgUG- -5'
5125 3' -53 NC_001798.1 + 2490 0.69 0.904692
Target:  5'- cGGCGgGUcaGCgccgCGggGcGCGGcGGCCGCg -3'
miRNA:   3'- -UCGUgCA--UGa---GCuuUaUGCC-CCGGUG- -5'
5125 3' -53 NC_001798.1 + 2966 0.68 0.916943
Target:  5'- gGGCGCGUcggCGugcgGCGGGGCgGCc -3'
miRNA:   3'- -UCGUGCAugaGCuuuaUGCCCCGgUG- -5'
5125 3' -53 NC_001798.1 + 3969 0.72 0.784393
Target:  5'- aGGcCGCGUcggcguccaGCUCGAccgcCGGGGCCGCc -3'
miRNA:   3'- -UC-GUGCA---------UGAGCUuuauGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 4889 0.67 0.947724
Target:  5'- cGGCugGa--UCcgGAGAUcCGGGGCCGCc -3'
miRNA:   3'- -UCGugCaugAG--CUUUAuGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 5615 0.66 0.963367
Target:  5'- cGCGgGcgGCUCcgccccAAAggggGCGGGGCCGCa -3'
miRNA:   3'- uCGUgCa-UGAGc-----UUUa---UGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 5743 0.66 0.975406
Target:  5'- gGGCccGCGUcaucccgcGCUCcgccccAAAggggGCGGGGCCGCa -3'
miRNA:   3'- -UCG--UGCA--------UGAGc-----UUUa---UGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 6622 0.66 0.975406
Target:  5'- gGGgACGgGC-CGggGggACGGGGCCcCg -3'
miRNA:   3'- -UCgUGCaUGaGCuuUa-UGCCCCGGuG- -5'
5125 3' -53 NC_001798.1 + 9667 0.69 0.88449
Target:  5'- cGCGCGgaggGCgCGGGAUGgGGGGCUcucACg -3'
miRNA:   3'- uCGUGCa---UGaGCUUUAUgCCCCGG---UG- -5'
5125 3' -53 NC_001798.1 + 13150 0.67 0.959808
Target:  5'- aGGUACGUACccgcggucUCGAAG-GCGGGGgCGu -3'
miRNA:   3'- -UCGUGCAUG--------AGCUUUaUGCCCCgGUg -5'
5125 3' -53 NC_001798.1 + 16496 0.66 0.975406
Target:  5'- aGGCGCGggugaGC-CGGuAGUACGucacacGGGCCGCa -3'
miRNA:   3'- -UCGUGCa----UGaGCU-UUAUGC------CCCGGUG- -5'
5125 3' -53 NC_001798.1 + 17223 0.74 0.664004
Target:  5'- cGCACGgccgccuUUCGggGUcgcGCGGGGCCGa -3'
miRNA:   3'- uCGUGCau-----GAGCuuUA---UGCCCCGGUg -5'
5125 3' -53 NC_001798.1 + 20112 0.69 0.892147
Target:  5'- cGUugGU-CUCGAGAUugccaacaucacacuCGGGGCCGu -3'
miRNA:   3'- uCGugCAuGAGCUUUAu--------------GCCCCGGUg -5'
5125 3' -53 NC_001798.1 + 20486 0.67 0.943214
Target:  5'- uGCGCGUGCgcgaucccCGGAAgacuggcCGGGGCCu- -3'
miRNA:   3'- uCGUGCAUGa-------GCUUUau-----GCCCCGGug -5'
5125 3' -53 NC_001798.1 + 21058 0.67 0.943214
Target:  5'- aAGCGCGgaugUUGGGAU-CGGGGCCcCg -3'
miRNA:   3'- -UCGUGCaug-AGCUUUAuGCCCCGGuG- -5'
5125 3' -53 NC_001798.1 + 22344 0.79 0.405862
Target:  5'- cGCGCGgGCgUCGGG--GCGGGGCCGCg -3'
miRNA:   3'- uCGUGCaUG-AGCUUuaUGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 23537 0.66 0.975406
Target:  5'- cGGCGCGgACgaCGAGGagGCGGGGgugcCCGCg -3'
miRNA:   3'- -UCGUGCaUGa-GCUUUa-UGCCCC----GGUG- -5'
5125 3' -53 NC_001798.1 + 23835 0.67 0.951991
Target:  5'- gGGCGCGUGCUguaCGGcggGCuGGGCgACa -3'
miRNA:   3'- -UCGUGCAUGA---GCUuuaUGcCCCGgUG- -5'
5125 3' -53 NC_001798.1 + 26175 0.67 0.959808
Target:  5'- cGCGCcGUGCUCccggcgcuGGAcgGCcGGGCCGCc -3'
miRNA:   3'- uCGUG-CAUGAG--------CUUuaUGcCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 26350 0.73 0.735765
Target:  5'- uGCGCGgcgGCccggCGGAGcUGCGcGGGCCGCg -3'
miRNA:   3'- uCGUGCa--UGa---GCUUU-AUGC-CCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.