miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5125 3' -53 NC_001798.1 + 27151 0.73 0.684783
Target:  5'- gGGCGCGggagggaggggcUGCUgCGAGcu-CGGGGCCGCg -3'
miRNA:   3'- -UCGUGC------------AUGA-GCUUuauGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 28048 0.66 0.963021
Target:  5'- cGUACG-ACUCGGGAaccGCGGucgagagcgcgccGGCCGCg -3'
miRNA:   3'- uCGUGCaUGAGCUUUa--UGCC-------------CCGGUG- -5'
5125 3' -53 NC_001798.1 + 29483 0.72 0.765303
Target:  5'- cGGUugGUcCcCGggG-ACGGGGCCGCc -3'
miRNA:   3'- -UCGugCAuGaGCuuUaUGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 29919 0.7 0.860631
Target:  5'- cGgGCGguggGCUCGggGgcgggacgcuugACGGGGCCGa -3'
miRNA:   3'- uCgUGCa---UGAGCuuUa-----------UGCCCCGGUg -5'
5125 3' -53 NC_001798.1 + 31146 0.66 0.972713
Target:  5'- cGGCGCGggggCGGcGGUGCGGGGgcgacCCGCg -3'
miRNA:   3'- -UCGUGCaugaGCU-UUAUGCCCC-----GGUG- -5'
5125 3' -53 NC_001798.1 + 34970 0.66 0.969813
Target:  5'- gGGgGCGgccGC-CGAGGUGCgGGGGCCc- -3'
miRNA:   3'- -UCgUGCa--UGaGCUUUAUG-CCCCGGug -5'
5125 3' -53 NC_001798.1 + 36317 0.67 0.947724
Target:  5'- gGGCGCGgGC-CGggGc-CGGGGCuCGCu -3'
miRNA:   3'- -UCGUGCaUGaGCuuUauGCCCCG-GUG- -5'
5125 3' -53 NC_001798.1 + 36524 0.66 0.972713
Target:  5'- cGCGCGgcgGC-CGG---GCGGGGgCGCg -3'
miRNA:   3'- uCGUGCa--UGaGCUuuaUGCCCCgGUG- -5'
5125 3' -53 NC_001798.1 + 36566 0.66 0.972713
Target:  5'- cGCGCGgcgGC-CGG---GCGGGGgCGCg -3'
miRNA:   3'- uCGUGCa--UGaGCUuuaUGCCCCgGUG- -5'
5125 3' -53 NC_001798.1 + 36608 0.66 0.972713
Target:  5'- cGCGCGgcgGC-CGG---GCGGGGgCGCg -3'
miRNA:   3'- uCGUGCa--UGaGCUuuaUGCCCCgGUG- -5'
5125 3' -53 NC_001798.1 + 38939 0.72 0.765303
Target:  5'- aGGCGCGUGg-CGAGGUuuuccagcACGGcGGCCGCc -3'
miRNA:   3'- -UCGUGCAUgaGCUUUA--------UGCC-CCGGUG- -5'
5125 3' -53 NC_001798.1 + 42159 0.67 0.951991
Target:  5'- aGGaCGCGgauCUCcc---GCGGGGCCGCg -3'
miRNA:   3'- -UC-GUGCau-GAGcuuuaUGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 43500 0.68 0.922696
Target:  5'- gGGCauACGUGCgcgcgCGcAGGUagGCGGcGGCCGCg -3'
miRNA:   3'- -UCG--UGCAUGa----GC-UUUA--UGCC-CCGGUG- -5'
5125 3' -53 NC_001798.1 + 45151 0.7 0.834569
Target:  5'- uGGCGCGccaccacccgggACUCGAGGgcuccaccaucgACGGGGCCGu -3'
miRNA:   3'- -UCGUGCa-----------UGAGCUUUa-----------UGCCCCGGUg -5'
5125 3' -53 NC_001798.1 + 46597 0.66 0.972713
Target:  5'- cGCGCGUcC-CGuu---CGGGGCUACg -3'
miRNA:   3'- uCGUGCAuGaGCuuuauGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 50640 0.66 0.977899
Target:  5'- -uCGCGUcacagaacgGCUCGugGUGCuGGGGuCCGCg -3'
miRNA:   3'- ucGUGCA---------UGAGCuuUAUG-CCCC-GGUG- -5'
5125 3' -53 NC_001798.1 + 51441 0.7 0.869848
Target:  5'- gGGCGCGgcCuuccgcgacggUCGAGAUucuCGcGGGCCGCg -3'
miRNA:   3'- -UCGUGCauG-----------AGCUUUAu--GC-CCCGGUG- -5'
5125 3' -53 NC_001798.1 + 51857 0.66 0.9667
Target:  5'- gGGCGCG-GCUCGGAGcucgACGacaGGGCgGCc -3'
miRNA:   3'- -UCGUGCaUGAGCUUUa---UGC---CCCGgUG- -5'
5125 3' -53 NC_001798.1 + 52531 0.66 0.977899
Target:  5'- cGCGcCGUGCUgGcg--ACGGGGCuCAUc -3'
miRNA:   3'- uCGU-GCAUGAgCuuuaUGCCCCG-GUG- -5'
5125 3' -53 NC_001798.1 + 53602 0.71 0.802911
Target:  5'- uGCugGUGCgCGccccguucAAGaGCGGGGCCGCc -3'
miRNA:   3'- uCGugCAUGaGC--------UUUaUGCCCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.