miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5125 3' -53 NC_001798.1 + 23835 0.67 0.951991
Target:  5'- gGGCGCGUGCUguaCGGcggGCuGGGCgACa -3'
miRNA:   3'- -UCGUGCAUGA---GCUuuaUGcCCCGgUG- -5'
5125 3' -53 NC_001798.1 + 66875 0.67 0.951157
Target:  5'- gGGCGCcgggGCUUGGGAaaggccacggggGCGGGGCCGu -3'
miRNA:   3'- -UCGUGca--UGAGCUUUa-----------UGCCCCGGUg -5'
5125 3' -53 NC_001798.1 + 36317 0.67 0.947724
Target:  5'- gGGCGCGgGC-CGggGc-CGGGGCuCGCu -3'
miRNA:   3'- -UCGUGCaUGaGCuuUauGCCCCG-GUG- -5'
5125 3' -53 NC_001798.1 + 4889 0.67 0.947724
Target:  5'- cGGCugGa--UCcgGAGAUcCGGGGCCGCc -3'
miRNA:   3'- -UCGugCaugAG--CUUUAuGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 111711 0.67 0.947724
Target:  5'- uGCACGaACUCGcug-ACGGuGGCCcGCu -3'
miRNA:   3'- uCGUGCaUGAGCuuuaUGCC-CCGG-UG- -5'
5125 3' -53 NC_001798.1 + 114955 0.67 0.945949
Target:  5'- aGGCcgACGUGCcggugaccuacggCGAGAUggucuugaACGGGGCCAa -3'
miRNA:   3'- -UCG--UGCAUGa------------GCUUUA--------UGCCCCGGUg -5'
5125 3' -53 NC_001798.1 + 103025 0.67 0.943214
Target:  5'- cAGCGCGaGCUCGGccu-CGGcGGCCucGCg -3'
miRNA:   3'- -UCGUGCaUGAGCUuuauGCC-CCGG--UG- -5'
5125 3' -53 NC_001798.1 + 75592 0.67 0.943214
Target:  5'- cAGCACGUGCUgGAcgaaaauucgcaGAU-CGGGcGCCu- -3'
miRNA:   3'- -UCGUGCAUGAgCU------------UUAuGCCC-CGGug -5'
5125 3' -53 NC_001798.1 + 57454 0.67 0.943214
Target:  5'- gGGCcCGguCUUGggGgGCGGGGCCGg -3'
miRNA:   3'- -UCGuGCauGAGCuuUaUGCCCCGGUg -5'
5125 3' -53 NC_001798.1 + 21058 0.67 0.943214
Target:  5'- aAGCGCGgaugUUGGGAU-CGGGGCCcCg -3'
miRNA:   3'- -UCGUGCaug-AGCUUUAuGCCCCGGuG- -5'
5125 3' -53 NC_001798.1 + 20486 0.67 0.943214
Target:  5'- uGCGCGUGCgcgaucccCGGAAgacuggcCGGGGCCu- -3'
miRNA:   3'- uCGUGCAUGa-------GCUUUau-----GCCCCGGug -5'
5125 3' -53 NC_001798.1 + 151767 0.68 0.938458
Target:  5'- uGCAUGUcgUUGAGcaucccccaggcGUGCGGGGCgGCg -3'
miRNA:   3'- uCGUGCAugAGCUU------------UAUGCCCCGgUG- -5'
5125 3' -53 NC_001798.1 + 85274 0.68 0.9282
Target:  5'- cGCGCGagGCuUCGggGggGCgGGGGCCGg -3'
miRNA:   3'- uCGUGCa-UG-AGCuuUa-UG-CCCCGGUg -5'
5125 3' -53 NC_001798.1 + 115030 0.68 0.9282
Target:  5'- aGGC-CGUGCggagccUGGAcgACGuGGGCCGCc -3'
miRNA:   3'- -UCGuGCAUGa-----GCUUuaUGC-CCCGGUG- -5'
5125 3' -53 NC_001798.1 + 60867 0.68 0.9282
Target:  5'- -uCGCGUcCUcCGAAGggggGCGGcGGCCGCa -3'
miRNA:   3'- ucGUGCAuGA-GCUUUa---UGCC-CCGGUG- -5'
5125 3' -53 NC_001798.1 + 130125 0.68 0.922696
Target:  5'- gAGCuCGgcCUCGugGUcgGGGGCCACu -3'
miRNA:   3'- -UCGuGCauGAGCuuUAugCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 100399 0.68 0.922696
Target:  5'- cGCgACGcGCUCGAGccGUGCaccguGGGCCACc -3'
miRNA:   3'- uCG-UGCaUGAGCUU--UAUGc----CCCGGUG- -5'
5125 3' -53 NC_001798.1 + 43500 0.68 0.922696
Target:  5'- gGGCauACGUGCgcgcgCGcAGGUagGCGGcGGCCGCg -3'
miRNA:   3'- -UCG--UGCAUGa----GC-UUUA--UGCC-CCGGUG- -5'
5125 3' -53 NC_001798.1 + 143693 0.68 0.922696
Target:  5'- uGGCACGUcccaaacgggACUUGGAGa--GGGGCgACg -3'
miRNA:   3'- -UCGUGCA----------UGAGCUUUaugCCCCGgUG- -5'
5125 3' -53 NC_001798.1 + 65692 0.68 0.916943
Target:  5'- gGGCGCGUGCUCuguuuGuuGUGCGccGCCACc -3'
miRNA:   3'- -UCGUGCAUGAG-----CuuUAUGCccCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.