miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5125 3' -53 NC_001798.1 + 36608 0.66 0.972713
Target:  5'- cGCGCGgcgGC-CGG---GCGGGGgCGCg -3'
miRNA:   3'- uCGUGCa--UGaGCUuuaUGCCCCgGUG- -5'
5125 3' -53 NC_001798.1 + 46597 0.66 0.972713
Target:  5'- cGCGCGUcC-CGuu---CGGGGCUACg -3'
miRNA:   3'- uCGUGCAuGaGCuuuauGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 58198 0.66 0.972713
Target:  5'- cAGCaucGCGUAUaCGGcGAUGuCGGGGaCCACa -3'
miRNA:   3'- -UCG---UGCAUGaGCU-UUAU-GCCCC-GGUG- -5'
5125 3' -53 NC_001798.1 + 131042 0.66 0.972713
Target:  5'- cAGCGCGcGCUCGuAGcGCGaGGUCACc -3'
miRNA:   3'- -UCGUGCaUGAGCuUUaUGCcCCGGUG- -5'
5125 3' -53 NC_001798.1 + 135040 0.66 0.972713
Target:  5'- cGGC-CGUGgcCUCGGAG-GCGGccGGCCGCc -3'
miRNA:   3'- -UCGuGCAU--GAGCUUUaUGCC--CCGGUG- -5'
5125 3' -53 NC_001798.1 + 150369 0.66 0.972713
Target:  5'- cGGCACGg---CGGGcgGCGcGGGCC-Cg -3'
miRNA:   3'- -UCGUGCaugaGCUUuaUGC-CCCGGuG- -5'
5125 3' -53 NC_001798.1 + 150100 0.66 0.972432
Target:  5'- gAGCGCGggGCggCGGAGgaagagGCGGaggacgaGGCCGCg -3'
miRNA:   3'- -UCGUGCa-UGa-GCUUUa-----UGCC-------CCGGUG- -5'
5125 3' -53 NC_001798.1 + 34970 0.66 0.969813
Target:  5'- gGGgGCGgccGC-CGAGGUGCgGGGGCCc- -3'
miRNA:   3'- -UCgUGCa--UGaGCUUUAUG-CCCCGGug -5'
5125 3' -53 NC_001798.1 + 51857 0.66 0.9667
Target:  5'- gGGCGCG-GCUCGGAGcucgACGacaGGGCgGCc -3'
miRNA:   3'- -UCGUGCaUGAGCUUUa---UGC---CCCGgUG- -5'
5125 3' -53 NC_001798.1 + 109454 0.66 0.963367
Target:  5'- aGGCGCGc-CUCGGGcAUcUGGuGGCCGCg -3'
miRNA:   3'- -UCGUGCauGAGCUU-UAuGCC-CCGGUG- -5'
5125 3' -53 NC_001798.1 + 5615 0.66 0.963367
Target:  5'- cGCGgGcgGCUCcgccccAAAggggGCGGGGCCGCa -3'
miRNA:   3'- uCGUgCa-UGAGc-----UUUa---UGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 28048 0.66 0.963021
Target:  5'- cGUACG-ACUCGGGAaccGCGGucgagagcgcgccGGCCGCg -3'
miRNA:   3'- uCGUGCaUGAGCUUUa--UGCC-------------CCGGUG- -5'
5125 3' -53 NC_001798.1 + 13150 0.67 0.959808
Target:  5'- aGGUACGUACccgcggucUCGAAG-GCGGGGgCGu -3'
miRNA:   3'- -UCGUGCAUG--------AGCUUUaUGCCCCgGUg -5'
5125 3' -53 NC_001798.1 + 83573 0.67 0.959808
Target:  5'- uGCugGgGCggUGAAAcUGCGGGGCgGCc -3'
miRNA:   3'- uCGugCaUGa-GCUUU-AUGCCCCGgUG- -5'
5125 3' -53 NC_001798.1 + 26175 0.67 0.959808
Target:  5'- cGCGCcGUGCUCccggcgcuGGAcgGCcGGGCCGCc -3'
miRNA:   3'- uCGUG-CAUGAG--------CUUuaUGcCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 135369 0.67 0.956017
Target:  5'- cGGCAgcUGCUCG----GCGGGGUCAUg -3'
miRNA:   3'- -UCGUgcAUGAGCuuuaUGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 72572 0.67 0.95363
Target:  5'- aAGCGCGcGCUgGucgcgucccucGCGGGGCUGCg -3'
miRNA:   3'- -UCGUGCaUGAgCuuua-------UGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 119863 0.67 0.95363
Target:  5'- uGCGCGUGaUCGGaaaaaaggccgggggGAUcccgguCGGGGCCGCc -3'
miRNA:   3'- uCGUGCAUgAGCU---------------UUAu-----GCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 42159 0.67 0.951991
Target:  5'- aGGaCGCGgauCUCcc---GCGGGGCCGCg -3'
miRNA:   3'- -UC-GUGCau-GAGcuuuaUGCCCCGGUG- -5'
5125 3' -53 NC_001798.1 + 23835 0.67 0.951991
Target:  5'- gGGCGCGUGCUguaCGGcggGCuGGGCgACa -3'
miRNA:   3'- -UCGUGCAUGA---GCUuuaUGcCCCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.