miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5125 5' -54.2 NC_001798.1 + 4624 0.71 0.762929
Target:  5'- cCGucgCGCUCCGggGGGGgcgACGGGAUCg -3'
miRNA:   3'- -GCua-GCGGGGCgaUCUCa--UGCUCUAG- -5'
5125 5' -54.2 NC_001798.1 + 5598 0.71 0.791036
Target:  5'- aGGUCGCCCCGUUGGuccGCGGGc-- -3'
miRNA:   3'- gCUAGCGGGGCGAUCucaUGCUCuag -5'
5125 5' -54.2 NC_001798.1 + 12693 0.66 0.964406
Target:  5'- uGAUCagGCCCggguUGCUGGGGgcgGCGGGggCg -3'
miRNA:   3'- gCUAG--CGGG----GCGAUCUCa--UGCUCuaG- -5'
5125 5' -54.2 NC_001798.1 + 16939 0.66 0.964406
Target:  5'- ---aCGCCCCcCggGGGGaGCGGGGUCa -3'
miRNA:   3'- gcuaGCGGGGcGa-UCUCaUGCUCUAG- -5'
5125 5' -54.2 NC_001798.1 + 31243 0.67 0.930462
Target:  5'- gCGG-CGCCCCGUUGcgggcGGGggUGGGAUCu -3'
miRNA:   3'- -GCUaGCGGGGCGAU-----CUCauGCUCUAG- -5'
5125 5' -54.2 NC_001798.1 + 36987 0.66 0.949308
Target:  5'- uGA-CGCCCCGCccccauacgAGAGUguggccggcGCGAGcgCg -3'
miRNA:   3'- gCUaGCGGGGCGa--------UCUCA---------UGCUCuaG- -5'
5125 5' -54.2 NC_001798.1 + 39355 0.67 0.940365
Target:  5'- gGAUCGCagaaCCGCccGAacgGCGGGGUCg -3'
miRNA:   3'- gCUAGCGg---GGCGauCUca-UGCUCUAG- -5'
5125 5' -54.2 NC_001798.1 + 57505 0.67 0.940365
Target:  5'- -cGUCGCCuuGC-GGGGUugGGGGg- -3'
miRNA:   3'- gcUAGCGGggCGaUCUCAugCUCUag -5'
5125 5' -54.2 NC_001798.1 + 60398 0.67 0.935534
Target:  5'- gGGUCGCCCUGggGGAGUaguaccGCGaAGcUCg -3'
miRNA:   3'- gCUAGCGGGGCgaUCUCA------UGC-UCuAG- -5'
5125 5' -54.2 NC_001798.1 + 77592 0.66 0.944955
Target:  5'- gGcgCGCCCUGCaGGAGcuggGCaAGGUCa -3'
miRNA:   3'- gCuaGCGGGGCGaUCUCa---UGcUCUAG- -5'
5125 5' -54.2 NC_001798.1 + 82275 0.67 0.935534
Target:  5'- cCGGUUGCCCCGagcgAGccuuuGUGCGguuGGGUCg -3'
miRNA:   3'- -GCUAGCGGGGCga--UCu----CAUGC---UCUAG- -5'
5125 5' -54.2 NC_001798.1 + 97048 0.68 0.888214
Target:  5'- cCGA-CGCCCUGCUGGAGgcgcaugACGuGuuUCa -3'
miRNA:   3'- -GCUaGCGGGGCGAUCUCa------UGCuCu-AG- -5'
5125 5' -54.2 NC_001798.1 + 116595 0.66 0.953426
Target:  5'- aGAUCGcCCCCGgUgaGGAGUGCccGAgcGAUCc -3'
miRNA:   3'- gCUAGC-GGGGCgA--UCUCAUG--CU--CUAG- -5'
5125 5' -54.2 NC_001798.1 + 137687 1.11 0.003579
Target:  5'- gCGAUCGCCCCGCUAGAGUACGAGAUCg -3'
miRNA:   3'- -GCUAGCGGGGCGAUCUCAUGCUCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.