Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5125 | 5' | -54.2 | NC_001798.1 | + | 137687 | 1.11 | 0.003579 |
Target: 5'- gCGAUCGCCCCGCUAGAGUACGAGAUCg -3' miRNA: 3'- -GCUAGCGGGGCGAUCUCAUGCUCUAG- -5' |
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5125 | 5' | -54.2 | NC_001798.1 | + | 116595 | 0.66 | 0.953426 |
Target: 5'- aGAUCGcCCCCGgUgaGGAGUGCccGAgcGAUCc -3' miRNA: 3'- gCUAGC-GGGGCgA--UCUCAUG--CU--CUAG- -5' |
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5125 | 5' | -54.2 | NC_001798.1 | + | 97048 | 0.68 | 0.888214 |
Target: 5'- cCGA-CGCCCUGCUGGAGgcgcaugACGuGuuUCa -3' miRNA: 3'- -GCUaGCGGGGCGAUCUCa------UGCuCu-AG- -5' |
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5125 | 5' | -54.2 | NC_001798.1 | + | 82275 | 0.67 | 0.935534 |
Target: 5'- cCGGUUGCCCCGagcgAGccuuuGUGCGguuGGGUCg -3' miRNA: 3'- -GCUAGCGGGGCga--UCu----CAUGC---UCUAG- -5' |
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5125 | 5' | -54.2 | NC_001798.1 | + | 77592 | 0.66 | 0.944955 |
Target: 5'- gGcgCGCCCUGCaGGAGcuggGCaAGGUCa -3' miRNA: 3'- gCuaGCGGGGCGaUCUCa---UGcUCUAG- -5' |
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5125 | 5' | -54.2 | NC_001798.1 | + | 60398 | 0.67 | 0.935534 |
Target: 5'- gGGUCGCCCUGggGGAGUaguaccGCGaAGcUCg -3' miRNA: 3'- gCUAGCGGGGCgaUCUCA------UGC-UCuAG- -5' |
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5125 | 5' | -54.2 | NC_001798.1 | + | 57505 | 0.67 | 0.940365 |
Target: 5'- -cGUCGCCuuGC-GGGGUugGGGGg- -3' miRNA: 3'- gcUAGCGGggCGaUCUCAugCUCUag -5' |
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5125 | 5' | -54.2 | NC_001798.1 | + | 39355 | 0.67 | 0.940365 |
Target: 5'- gGAUCGCagaaCCGCccGAacgGCGGGGUCg -3' miRNA: 3'- gCUAGCGg---GGCGauCUca-UGCUCUAG- -5' |
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5125 | 5' | -54.2 | NC_001798.1 | + | 36987 | 0.66 | 0.949308 |
Target: 5'- uGA-CGCCCCGCccccauacgAGAGUguggccggcGCGAGcgCg -3' miRNA: 3'- gCUaGCGGGGCGa--------UCUCA---------UGCUCuaG- -5' |
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5125 | 5' | -54.2 | NC_001798.1 | + | 31243 | 0.67 | 0.930462 |
Target: 5'- gCGG-CGCCCCGUUGcgggcGGGggUGGGAUCu -3' miRNA: 3'- -GCUaGCGGGGCGAU-----CUCauGCUCUAG- -5' |
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5125 | 5' | -54.2 | NC_001798.1 | + | 16939 | 0.66 | 0.964406 |
Target: 5'- ---aCGCCCCcCggGGGGaGCGGGGUCa -3' miRNA: 3'- gcuaGCGGGGcGa-UCUCaUGCUCUAG- -5' |
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5125 | 5' | -54.2 | NC_001798.1 | + | 12693 | 0.66 | 0.964406 |
Target: 5'- uGAUCagGCCCggguUGCUGGGGgcgGCGGGggCg -3' miRNA: 3'- gCUAG--CGGG----GCGAUCUCa--UGCUCuaG- -5' |
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5125 | 5' | -54.2 | NC_001798.1 | + | 5598 | 0.71 | 0.791036 |
Target: 5'- aGGUCGCCCCGUUGGuccGCGGGc-- -3' miRNA: 3'- gCUAGCGGGGCGAUCucaUGCUCuag -5' |
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5125 | 5' | -54.2 | NC_001798.1 | + | 4624 | 0.71 | 0.762929 |
Target: 5'- cCGucgCGCUCCGggGGGGgcgACGGGAUCg -3' miRNA: 3'- -GCua-GCGGGGCgaUCUCa--UGCUCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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