miRNA display CGI


Results 61 - 80 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5126 3' -53.4 NC_001798.1 + 39123 0.67 0.957067
Target:  5'- cGGcccGCGGguUGGCUGCGAAugUGCGGUAg -3'
miRNA:   3'- uCC---UGCU--GCUGGCGUUUugGCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 115904 0.67 0.957067
Target:  5'- gGGGcguuCGAgGACCGCAGcuACCcgGCGGUGu -3'
miRNA:   3'- -UCCu---GCUgCUGGCGUUu-UGG--CGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 22766 0.67 0.957067
Target:  5'- cGGACGAgGACgGgGGAcgucuccggGCCGCGGc- -3'
miRNA:   3'- uCCUGCUgCUGgCgUUU---------UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 99188 0.67 0.957067
Target:  5'- cGGGACGACcacgaGACCGaCAuggagcucAAGCCgGCGAa- -3'
miRNA:   3'- -UCCUGCUG-----CUGGC-GU--------UUUGG-CGCUau -5'
5126 3' -53.4 NC_001798.1 + 142410 0.67 0.957067
Target:  5'- cGGaguGCGACGGCCGgCAuccuGACgGUGGUGu -3'
miRNA:   3'- uCC---UGCUGCUGGC-GUu---UUGgCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 90076 0.67 0.958577
Target:  5'- cAGGACGACGgggGCCggcaggccccuggagGCGAGAUCGCuGAg- -3'
miRNA:   3'- -UCCUGCUGC---UGG---------------CGUUUUGGCG-CUau -5'
5126 3' -53.4 NC_001798.1 + 68263 0.67 0.948953
Target:  5'- cAGGAUGAcaaccggaacgcCGACCGCcccAAACCGCucGGUGc -3'
miRNA:   3'- -UCCUGCU------------GCUGGCGu--UUUGGCG--CUAU- -5'
5126 3' -53.4 NC_001798.1 + 52956 0.67 0.948953
Target:  5'- cGGGCGcACGuguCCGgGAGGCgCGCGAc- -3'
miRNA:   3'- uCCUGC-UGCu--GGCgUUUUG-GCGCUau -5'
5126 3' -53.4 NC_001798.1 + 144328 0.67 0.944538
Target:  5'- aGGGGCGGCG-UCGCAucGCC-CGAc- -3'
miRNA:   3'- -UCCUGCUGCuGGCGUuuUGGcGCUau -5'
5126 3' -53.4 NC_001798.1 + 134552 0.67 0.944538
Target:  5'- -cGACGAgGACCGCGcguuuuGCgCGCGAa- -3'
miRNA:   3'- ucCUGCUgCUGGCGUuu----UG-GCGCUau -5'
5126 3' -53.4 NC_001798.1 + 23542 0.67 0.947654
Target:  5'- cGGACGACGAggaggcgggggugcCCGCGAGGgccCCGgGGg- -3'
miRNA:   3'- uCCUGCUGCU--------------GGCGUUUU---GGCgCUau -5'
5126 3' -53.4 NC_001798.1 + 21747 0.67 0.947654
Target:  5'- -cGGCGGCGACCGgGAcgccggcccuuuauGugCGCGAg- -3'
miRNA:   3'- ucCUGCUGCUGGCgUU--------------UugGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 52370 0.67 0.948953
Target:  5'- uGGGCGAC-ACCGCGGcgcGCCGCc--- -3'
miRNA:   3'- uCCUGCUGcUGGCGUUu--UGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 9098 0.67 0.948953
Target:  5'- gAGGGCcACGggaaagGCCGCGGGggagccGCCGCGAg- -3'
miRNA:   3'- -UCCUGcUGC------UGGCGUUU------UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 79387 0.67 0.948953
Target:  5'- cGGGCG-CGGgCGCGGAGuCCGCGc-- -3'
miRNA:   3'- uCCUGCuGCUgGCGUUUU-GGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 97396 0.67 0.948953
Target:  5'- -uGACGACG-CCGCu--GCUGCGGc- -3'
miRNA:   3'- ucCUGCUGCuGGCGuuuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 6869 0.67 0.948953
Target:  5'- cGGACGuGCGAUCGgAuc-CCGCGAg- -3'
miRNA:   3'- uCCUGC-UGCUGGCgUuuuGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 30344 0.67 0.948953
Target:  5'- -uGACGACGACCuuc--ACCGCGAc- -3'
miRNA:   3'- ucCUGCUGCUGGcguuuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 150201 0.68 0.929302
Target:  5'- gGGGGCGGC-ACCGgGGGuguugguGCCGCGGg- -3'
miRNA:   3'- -UCCUGCUGcUGGCgUUU-------UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 55911 0.68 0.924435
Target:  5'- -cGGCGACGAgCGCAAAGgccCCGaCGAUc -3'
miRNA:   3'- ucCUGCUGCUgGCGUUUU---GGC-GCUAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.