Results 41 - 60 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 42497 | 0.67 | 0.944538 |
Target: 5'- cGGGGCGGgGACCGguAGGCacaCGCGc-- -3' miRNA: 3'- -UCCUGCUgCUGGCguUUUG---GCGCuau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 242 | 0.67 | 0.944538 |
Target: 5'- cAGGACGGgGACUaGCAGGcuguGCCGCa--- -3' miRNA: 3'- -UCCUGCUgCUGG-CGUUU----UGGCGcuau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 48210 | 0.67 | 0.944538 |
Target: 5'- uGGGACaugucGCGGCCGCAc-ACCGaCGAa- -3' miRNA: 3'- -UCCUGc----UGCUGGCGUuuUGGC-GCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 34968 | 0.67 | 0.944538 |
Target: 5'- gAGGG-GGCGGCCGCcGAGgUGCGGg- -3' miRNA: 3'- -UCCUgCUGCUGGCGuUUUgGCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 86451 | 0.67 | 0.944083 |
Target: 5'- gGGGACGGgGGCCgguucgugagccuGCuucGGGCCGCGGg- -3' miRNA: 3'- -UCCUGCUgCUGG-------------CGu--UUUGGCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 79387 | 0.67 | 0.948953 |
Target: 5'- cGGGCG-CGGgCGCGGAGuCCGCGc-- -3' miRNA: 3'- uCCUGCuGCUgGCGUUUU-GGCGCuau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 97396 | 0.67 | 0.948953 |
Target: 5'- -uGACGACG-CCGCu--GCUGCGGc- -3' miRNA: 3'- ucCUGCUGCuGGCGuuuUGGCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 142410 | 0.67 | 0.957067 |
Target: 5'- cGGaguGCGACGGCCGgCAuccuGACgGUGGUGu -3' miRNA: 3'- uCC---UGCUGCUGGC-GUu---UUGgCGCUAU- -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 99188 | 0.67 | 0.957067 |
Target: 5'- cGGGACGACcacgaGACCGaCAuggagcucAAGCCgGCGAa- -3' miRNA: 3'- -UCCUGCUG-----CUGGC-GU--------UUUGG-CGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 22766 | 0.67 | 0.957067 |
Target: 5'- cGGACGAgGACgGgGGAcgucuccggGCCGCGGc- -3' miRNA: 3'- uCCUGCUgCUGgCgUUU---------UGGCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 115904 | 0.67 | 0.957067 |
Target: 5'- gGGGcguuCGAgGACCGCAGcuACCcgGCGGUGu -3' miRNA: 3'- -UCCu---GCUgCUGGCGUUu-UGG--CGCUAU- -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 39123 | 0.67 | 0.957067 |
Target: 5'- cGGcccGCGGguUGGCUGCGAAugUGCGGUAg -3' miRNA: 3'- uCC---UGCU--GCUGGCGUUUugGCGCUAU- -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 31365 | 0.67 | 0.957067 |
Target: 5'- cGGGugGGCGaagacGCCGCG--GCgGCGGa- -3' miRNA: 3'- -UCCugCUGC-----UGGCGUuuUGgCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 93448 | 0.67 | 0.953128 |
Target: 5'- cGuGGCGGCcaacCCGCAGcugGACCGCGAg- -3' miRNA: 3'- uC-CUGCUGcu--GGCGUU---UUGGCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 36277 | 0.67 | 0.953128 |
Target: 5'- gGGGugGGCGGCgGgGGGggguGCCGUGGg- -3' miRNA: 3'- -UCCugCUGCUGgCgUUU----UGGCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 5172 | 0.67 | 0.952721 |
Target: 5'- cGGGuagauccUGGCGGCCGCGucgguAGCCGCGc-- -3' miRNA: 3'- uCCU-------GCUGCUGGCGUu----UUGGCGCuau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 68263 | 0.67 | 0.948953 |
Target: 5'- cAGGAUGAcaaccggaacgcCGACCGCcccAAACCGCucGGUGc -3' miRNA: 3'- -UCCUGCU------------GCUGGCGu--UUUGGCG--CUAU- -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 52956 | 0.67 | 0.948953 |
Target: 5'- cGGGCGcACGuguCCGgGAGGCgCGCGAc- -3' miRNA: 3'- uCCUGC-UGCu--GGCgUUUUG-GCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 30344 | 0.67 | 0.948953 |
Target: 5'- -uGACGACGACCuuc--ACCGCGAc- -3' miRNA: 3'- ucCUGCUGCUGGcguuuUGGCGCUau -5' |
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5126 | 3' | -53.4 | NC_001798.1 | + | 6869 | 0.67 | 0.948953 |
Target: 5'- cGGACGuGCGAUCGgAuc-CCGCGAg- -3' miRNA: 3'- uCCUGC-UGCUGGCgUuuuGGCGCUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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