Results 21 - 40 of 202 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 59667 | 0.66 | 0.973383 |
Target: 5'- gGGGGCGAcuCGGCuCGCGuggGGGCgGCGGg- -3' miRNA: 3'- -UCCUGCU--GCUG-GCGU---UUUGgCGCUau -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 126123 | 0.66 | 0.973383 |
Target: 5'- gGGGACGGCGACCugGCGGA--CG-GAUGg -3' miRNA: 3'- -UCCUGCUGCUGG--CGUUUugGCgCUAU- -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 28600 | 0.66 | 0.973383 |
Target: 5'- uGGGA-GACGGCCGCGcgccuGGCC-CGAc- -3' miRNA: 3'- -UCCUgCUGCUGGCGUu----UUGGcGCUau -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 83854 | 0.66 | 0.973109 |
Target: 5'- cGGGCGGCGcuggcggGCC-CGAGGCgGCGAc- -3' miRNA: 3'- uCCUGCUGC-------UGGcGUUUUGgCGCUau -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 104659 | 0.66 | 0.972833 |
Target: 5'- cAGGGCcccgugcucguaGCGGCCGCcGGccGCCGCGAa- -3' miRNA: 3'- -UCCUGc-----------UGCUGGCGuUU--UGGCGCUau -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 53524 | 0.66 | 0.96751 |
Target: 5'- uGGAcaucccCGACGACCcgGCGGgcGACUGCGAc- -3' miRNA: 3'- uCCU------GCUGCUGG--CGUU--UUGGCGCUau -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 77487 | 0.66 | 0.96751 |
Target: 5'- cGGcccgcGCGACGACCGCugcucgggAAAGCCucGCGGg- -3' miRNA: 3'- uCC-----UGCUGCUGGCG--------UUUUGG--CGCUau -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 92100 | 0.66 | 0.96751 |
Target: 5'- gAGaGACGACGGCgGgCAGcAGCCGuCGAc- -3' miRNA: 3'- -UC-CUGCUGCUGgC-GUU-UUGGC-GCUau -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 154409 | 0.66 | 0.96751 |
Target: 5'- cGGGCGGCGGCgGCGggcGGGCgGCa--- -3' miRNA: 3'- uCCUGCUGCUGgCGU---UUUGgCGcuau -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 53439 | 0.66 | 0.970551 |
Target: 5'- gAGGugGagcugucggGCGGCCaGCuGAGCCGCGc-- -3' miRNA: 3'- -UCCugC---------UGCUGG-CGuUUUGGCGCuau -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 142481 | 0.66 | 0.970551 |
Target: 5'- cGGGACGGCccccgaGGCggCGCGGGGgUGCGAUAa -3' miRNA: 3'- -UCCUGCUG------CUG--GCGUUUUgGCGCUAU- -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 36277 | 0.67 | 0.953128 |
Target: 5'- gGGGugGGCGGCgGgGGGggguGCCGUGGg- -3' miRNA: 3'- -UCCugCUGCUGgCgUUU----UGGCGCUau -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 93448 | 0.67 | 0.953128 |
Target: 5'- cGuGGCGGCcaacCCGCAGcugGACCGCGAg- -3' miRNA: 3'- uC-CUGCUGcu--GGCGUU---UUGGCGCUau -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 31365 | 0.67 | 0.957067 |
Target: 5'- cGGGugGGCGaagacGCCGCG--GCgGCGGa- -3' miRNA: 3'- -UCCugCUGC-----UGGCGUuuUGgCGCUau -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 39123 | 0.67 | 0.957067 |
Target: 5'- cGGcccGCGGguUGGCUGCGAAugUGCGGUAg -3' miRNA: 3'- uCC---UGCU--GCUGGCGUUUugGCGCUAU- -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 115904 | 0.67 | 0.957067 |
Target: 5'- gGGGcguuCGAgGACCGCAGcuACCcgGCGGUGu -3' miRNA: 3'- -UCCu---GCUgCUGGCGUUu-UGG--CGCUAU- -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 22766 | 0.67 | 0.957067 |
Target: 5'- cGGACGAgGACgGgGGAcgucuccggGCCGCGGc- -3' miRNA: 3'- uCCUGCUgCUGgCgUUU---------UGGCGCUau -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 99188 | 0.67 | 0.957067 |
Target: 5'- cGGGACGACcacgaGACCGaCAuggagcucAAGCCgGCGAa- -3' miRNA: 3'- -UCCUGCUG-----CUGGC-GU--------UUUGG-CGCUau -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 142410 | 0.67 | 0.957067 |
Target: 5'- cGGaguGCGACGGCCGgCAuccuGACgGUGGUGu -3' miRNA: 3'- uCC---UGCUGCUGGC-GUu---UUGgCGCUAU- -5' |
|||||||
5126 | 3' | -53.4 | NC_001798.1 | + | 5172 | 0.67 | 0.952721 |
Target: 5'- cGGGuagauccUGGCGGCCGCGucgguAGCCGCGc-- -3' miRNA: 3'- uCCU-------GCUGCUGGCGUu----UUGGCGCuau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home