miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5126 3' -53.4 NC_001798.1 + 150749 0.74 0.658686
Target:  5'- cGGcACGACGGCCGCGAcggcagGGCCGCc--- -3'
miRNA:   3'- uCC-UGCUGCUGGCGUU------UUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 150003 0.74 0.658686
Target:  5'- cGGGGCGAgCGGCC-CGugGCCGCGGUc -3'
miRNA:   3'- -UCCUGCU-GCUGGcGUuuUGGCGCUAu -5'
5126 3' -53.4 NC_001798.1 + 31152 0.73 0.67938
Target:  5'- gGGGGCGGCGGugcgggggcgacCCGCGGAaccucccagcccGCCGCGAc- -3'
miRNA:   3'- -UCCUGCUGCU------------GGCGUUU------------UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 23239 0.73 0.689671
Target:  5'- cGGaGACGACGuCCGCGGu-CCGCGGg- -3'
miRNA:   3'- -UC-CUGCUGCuGGCGUUuuGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 73961 0.73 0.699913
Target:  5'- uGGACGcgcGCGGCCGCGGGcuccgggccGCCGCGcAUGu -3'
miRNA:   3'- uCCUGC---UGCUGGCGUUU---------UGGCGC-UAU- -5'
5126 3' -53.4 NC_001798.1 + 27559 0.73 0.699913
Target:  5'- aGGGGCGGCGcCCGCGGGGgaGCGGc- -3'
miRNA:   3'- -UCCUGCUGCuGGCGUUUUggCGCUau -5'
5126 3' -53.4 NC_001798.1 + 115479 0.72 0.730246
Target:  5'- gGGGGCGugaaccACGACCccguCGAGGCCGCGAa- -3'
miRNA:   3'- -UCCUGC------UGCUGGc---GUUUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 129334 0.72 0.730246
Target:  5'- uGGAgGACGGCCGCGGAGcgcCCGcCGGg- -3'
miRNA:   3'- uCCUgCUGCUGGCGUUUU---GGC-GCUau -5'
5126 3' -53.4 NC_001798.1 + 2507 0.72 0.740195
Target:  5'- gGGGcGCGGCGGCCGCG--GCgGCGGc- -3'
miRNA:   3'- -UCC-UGCUGCUGGCGUuuUGgCGCUau -5'
5126 3' -53.4 NC_001798.1 + 66772 0.72 0.750047
Target:  5'- cGGcGGCGugGGCCGCGGAAUCG-GAg- -3'
miRNA:   3'- -UC-CUGCugCUGGCGUUUUGGCgCUau -5'
5126 3' -53.4 NC_001798.1 + 69522 0.72 0.750047
Target:  5'- cGGGGCGugGcCCGCGAGcUCGCGcgGg -3'
miRNA:   3'- -UCCUGCugCuGGCGUUUuGGCGCuaU- -5'
5126 3' -53.4 NC_001798.1 + 3319 0.72 0.759791
Target:  5'- cGGGGCGGCGGCgGCGGcgggcuucCCGCGGg- -3'
miRNA:   3'- -UCCUGCUGCUGgCGUUuu------GGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 30909 0.72 0.759791
Target:  5'- gAGGACGAUGACCu---GGCCGaCGGUGa -3'
miRNA:   3'- -UCCUGCUGCUGGcguuUUGGC-GCUAU- -5'
5126 3' -53.4 NC_001798.1 + 48342 0.72 0.759791
Target:  5'- cAGGACGucgacGCGACCGCG--GCCGCc--- -3'
miRNA:   3'- -UCCUGC-----UGCUGGCGUuuUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 152947 0.72 0.769419
Target:  5'- gGGGAUGGCGGCCG--GGACCGCc--- -3'
miRNA:   3'- -UCCUGCUGCUGGCguUUUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 105622 0.72 0.769419
Target:  5'- cGGGCGACGACgGCGcu-CCGgGAa- -3'
miRNA:   3'- uCCUGCUGCUGgCGUuuuGGCgCUau -5'
5126 3' -53.4 NC_001798.1 + 137483 0.72 0.769419
Target:  5'- gGGGAgGGgGGCCgggGCAGAGCCGCGu-- -3'
miRNA:   3'- -UCCUgCUgCUGG---CGUUUUGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 19469 0.71 0.77892
Target:  5'- gGGGACGAUGACCccCAGAACCcCGGg- -3'
miRNA:   3'- -UCCUGCUGCUGGc-GUUUUGGcGCUau -5'
5126 3' -53.4 NC_001798.1 + 134163 0.71 0.788285
Target:  5'- cGGGGCcgucGCGGCCGCccgcGCCGCGAc- -3'
miRNA:   3'- -UCCUGc---UGCUGGCGuuu-UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 149293 0.71 0.788285
Target:  5'- cGGGugGcGCGACCG-GAGGCCGUGGa- -3'
miRNA:   3'- -UCCugC-UGCUGGCgUUUUGGCGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.