miRNA display CGI


Results 41 - 60 of 202 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5126 3' -53.4 NC_001798.1 + 150087 0.71 0.797505
Target:  5'- gGGGGCGagggGCGAgCGCGGGGCgGCGGa- -3'
miRNA:   3'- -UCCUGC----UGCUgGCGUUUUGgCGCUau -5'
5126 3' -53.4 NC_001798.1 + 28790 0.71 0.797505
Target:  5'- cGGcGGCGGCGGCgCGCGGGuccuccgccGCCGCGGg- -3'
miRNA:   3'- -UC-CUGCUGCUG-GCGUUU---------UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 153969 0.71 0.797505
Target:  5'- gAGGACG-CGGCCgGCGcgcucucGACCGCGGUu -3'
miRNA:   3'- -UCCUGCuGCUGG-CGUu------UUGGCGCUAu -5'
5126 3' -53.4 NC_001798.1 + 106091 0.71 0.806571
Target:  5'- cGGucGCGGCGACC-CGGcGCCGCGAc- -3'
miRNA:   3'- uCC--UGCUGCUGGcGUUuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 28991 0.71 0.814591
Target:  5'- gGGGGCGGCGccggccaACCGCGcgccGCCGCGcgGg -3'
miRNA:   3'- -UCCUGCUGC-------UGGCGUuu--UGGCGCuaU- -5'
5126 3' -53.4 NC_001798.1 + 98629 0.71 0.815474
Target:  5'- cGGGCGGCGugGCCGCGAccgucGCgGCGAa- -3'
miRNA:   3'- uCCUGCUGC--UGGCGUUu----UGgCGCUau -5'
5126 3' -53.4 NC_001798.1 + 152225 0.71 0.815474
Target:  5'- gGGGucugccGCGGCGGCCGCucgGGGCCGgGGUc -3'
miRNA:   3'- -UCC------UGCUGCUGGCGu--UUUGGCgCUAu -5'
5126 3' -53.4 NC_001798.1 + 25097 0.71 0.815474
Target:  5'- cGGGCGGCGccCCGCGccccccgaagaaGAGCCGCGcgGa -3'
miRNA:   3'- uCCUGCUGCu-GGCGU------------UUUGGCGCuaU- -5'
5126 3' -53.4 NC_001798.1 + 108584 0.71 0.815474
Target:  5'- uGGGuaacauuCG-CGGCCGCGccGGACCGCGAg- -3'
miRNA:   3'- -UCCu------GCuGCUGGCGU--UUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 52510 0.71 0.815474
Target:  5'- aGGGACGACGcggcgGCCGCGcgcGCCGUGcUGg -3'
miRNA:   3'- -UCCUGCUGC-----UGGCGUuu-UGGCGCuAU- -5'
5126 3' -53.4 NC_001798.1 + 87187 0.71 0.815474
Target:  5'- cGGGCGACGggcggcuggccACCGUc-AGCCGCGAg- -3'
miRNA:   3'- uCCUGCUGC-----------UGGCGuuUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 82007 0.71 0.815474
Target:  5'- cGGG-GGCGACCGCc--GCCGCGGc- -3'
miRNA:   3'- uCCUgCUGCUGGCGuuuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 75133 0.71 0.815474
Target:  5'- cAGGGCGGCGGCgaCGaCGGGcCCGCGAg- -3'
miRNA:   3'- -UCCUGCUGCUG--GC-GUUUuGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 2273 0.71 0.815474
Target:  5'- cGGGGCGGCGcAgCGCGcgGCCaGCGAg- -3'
miRNA:   3'- -UCCUGCUGC-UgGCGUuuUGG-CGCUau -5'
5126 3' -53.4 NC_001798.1 + 6011 0.71 0.815474
Target:  5'- cGGGACGGCaGCgGCGGcAUCGCGAa- -3'
miRNA:   3'- -UCCUGCUGcUGgCGUUuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 5457 0.7 0.824205
Target:  5'- cGGGCGGCuuCCGCuuccgcCCGCGAUGc -3'
miRNA:   3'- uCCUGCUGcuGGCGuuuu--GGCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 62446 0.7 0.824205
Target:  5'- cGGACGuCG-CCGguGGGCCGCGcgAc -3'
miRNA:   3'- uCCUGCuGCuGGCguUUUGGCGCuaU- -5'
5126 3' -53.4 NC_001798.1 + 24840 0.7 0.832755
Target:  5'- uGGcCGGCGGCaGCGAGGCCGCcGUGg -3'
miRNA:   3'- uCCuGCUGCUGgCGUUUUGGCGcUAU- -5'
5126 3' -53.4 NC_001798.1 + 58580 0.7 0.832755
Target:  5'- cGGGGCGGgggagacuCGACCGCGGAgacgacgcaaaaGCgGCGGUGg -3'
miRNA:   3'- -UCCUGCU--------GCUGGCGUUU------------UGgCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 32022 0.7 0.832755
Target:  5'- cGGACucgGGCGACCGCGgccacGGGCCGCu--- -3'
miRNA:   3'- uCCUG---CUGCUGGCGU-----UUUGGCGcuau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.