miRNA display CGI


Results 41 - 60 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5126 3' -53.4 NC_001798.1 + 24541 0.68 0.924435
Target:  5'- -cGACGACGACgGC---GCCgGCGGUGg -3'
miRNA:   3'- ucCUGCUGCUGgCGuuuUGG-CGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 24582 0.67 0.939881
Target:  5'- cGGA-GGCgGGCCGCGugGCCGUGGa- -3'
miRNA:   3'- uCCUgCUG-CUGGCGUuuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 24726 0.69 0.879843
Target:  5'- cGGGCG-CGGCCGCcccGCCGCa--- -3'
miRNA:   3'- uCCUGCuGCUGGCGuuuUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 24840 0.7 0.832755
Target:  5'- uGGcCGGCGGCaGCGAGGCCGCcGUGg -3'
miRNA:   3'- uCCuGCUGCUGgCGUUUUGGCGcUAU- -5'
5126 3' -53.4 NC_001798.1 + 24903 0.66 0.96751
Target:  5'- uGGGccCGGCGcuGCCGCGGAGcCCGCGc-- -3'
miRNA:   3'- -UCCu-GCUGC--UGGCGUUUU-GGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 25097 0.71 0.815474
Target:  5'- cGGGCGGCGccCCGCGccccccgaagaaGAGCCGCGcgGa -3'
miRNA:   3'- uCCUGCUGCu-GGCGU------------UUUGGCGCuaU- -5'
5126 3' -53.4 NC_001798.1 + 25583 0.69 0.879843
Target:  5'- cGGGCGAggaccUGGCCGCG-GGCCGCGc-- -3'
miRNA:   3'- uCCUGCU-----GCUGGCGUuUUGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 26336 0.68 0.912303
Target:  5'- gGGGcgcgacgccgugcGCGGCGGCCcgGCGGAGCUGCGcgGg -3'
miRNA:   3'- -UCC-------------UGCUGCUGG--CGUUUUGGCGCuaU- -5'
5126 3' -53.4 NC_001798.1 + 26484 0.76 0.555224
Target:  5'- uGGGCGuCGGCCGCG-GGCCGCGcgGg -3'
miRNA:   3'- uCCUGCuGCUGGCGUuUUGGCGCuaU- -5'
5126 3' -53.4 NC_001798.1 + 26507 0.69 0.886928
Target:  5'- nGGGACGGugcUGGCCGCGgcGGGCgGCGGc- -3'
miRNA:   3'- -UCCUGCU---GCUGGCGU--UUUGgCGCUau -5'
5126 3' -53.4 NC_001798.1 + 27249 0.8 0.337019
Target:  5'- gGGGA-GGCGGCCGCGGGACCGCa--- -3'
miRNA:   3'- -UCCUgCUGCUGGCGUUUUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 27559 0.73 0.699913
Target:  5'- aGGGGCGGCGcCCGCGGGGgaGCGGc- -3'
miRNA:   3'- -UCCUGCUGCuGGCGUUUUggCGCUau -5'
5126 3' -53.4 NC_001798.1 + 28600 0.66 0.973383
Target:  5'- uGGGA-GACGGCCGCGcgccuGGCC-CGAc- -3'
miRNA:   3'- -UCCUgCUGCUGGCGUu----UUGGcGCUau -5'
5126 3' -53.4 NC_001798.1 + 28790 0.71 0.797505
Target:  5'- cGGcGGCGGCGGCgCGCGGGuccuccgccGCCGCGGg- -3'
miRNA:   3'- -UC-CUGCUGCUG-GCGUUU---------UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 28861 0.68 0.924435
Target:  5'- gAGGGCGGCcucGGCCgGCGGAGCCcCGGa- -3'
miRNA:   3'- -UCCUGCUG---CUGG-CGUUUUGGcGCUau -5'
5126 3' -53.4 NC_001798.1 + 28991 0.71 0.814591
Target:  5'- gGGGGCGGCGccggccaACCGCGcgccGCCGCGcgGg -3'
miRNA:   3'- -UCCUGCUGC-------UGGCGUuu--UGGCGCuaU- -5'
5126 3' -53.4 NC_001798.1 + 30344 0.67 0.948953
Target:  5'- -uGACGACGACCuuc--ACCGCGAc- -3'
miRNA:   3'- ucCUGCUGCUGGcguuuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 30540 0.68 0.918793
Target:  5'- gGGGGCGACGugUGU---GCCGUGu-- -3'
miRNA:   3'- -UCCUGCUGCugGCGuuuUGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 30909 0.72 0.759791
Target:  5'- gAGGACGAUGACCu---GGCCGaCGGUGa -3'
miRNA:   3'- -UCCUGCUGCUGGcguuUUGGC-GCUAU- -5'
5126 3' -53.4 NC_001798.1 + 31152 0.73 0.67938
Target:  5'- gGGGGCGGCGGugcgggggcgacCCGCGGAaccucccagcccGCCGCGAc- -3'
miRNA:   3'- -UCCUGCUGCU------------GGCGUUU------------UGGCGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.