miRNA display CGI


Results 21 - 40 of 202 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5126 3' -53.4 NC_001798.1 + 8792 0.66 0.960773
Target:  5'- cGGGACGGgcgaGGCCGCGGggUaaaGCGGc- -3'
miRNA:   3'- -UCCUGCUg---CUGGCGUUuuGg--CGCUau -5'
5126 3' -53.4 NC_001798.1 + 9098 0.67 0.948953
Target:  5'- gAGGGCcACGggaaagGCCGCGGGggagccGCCGCGAg- -3'
miRNA:   3'- -UCCUGcUGC------UGGCGUUU------UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 10977 0.69 0.89378
Target:  5'- cGGGCGGCGACUccuUAAAugCGCGGc- -3'
miRNA:   3'- uCCUGCUGCUGGc--GUUUugGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 11400 0.66 0.964252
Target:  5'- cGGGCcAUGGCCGCcucguuGACCGCGc-- -3'
miRNA:   3'- uCCUGcUGCUGGCGuu----UUGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 12243 0.69 0.886928
Target:  5'- -aGACcaGACuGACCGUggGGCCGCGGa- -3'
miRNA:   3'- ucCUG--CUG-CUGGCGuuUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 16435 0.79 0.36071
Target:  5'- gGGGACGGCGGCuCGCc--GCCGCGAc- -3'
miRNA:   3'- -UCCUGCUGCUG-GCGuuuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 17104 0.68 0.923882
Target:  5'- cGGACGAuuguuccCGGCCGC----CCGCGAg- -3'
miRNA:   3'- uCCUGCU-------GCUGGCGuuuuGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 17526 0.69 0.886928
Target:  5'- -cGAUGGCGcucaagagcuGCCGgGAGACCGCGGUu -3'
miRNA:   3'- ucCUGCUGC----------UGGCgUUUUGGCGCUAu -5'
5126 3' -53.4 NC_001798.1 + 19469 0.71 0.77892
Target:  5'- gGGGACGAUGACCccCAGAACCcCGGg- -3'
miRNA:   3'- -UCCUGCUGCUGGc-GUUUUGGcGCUau -5'
5126 3' -53.4 NC_001798.1 + 21747 0.67 0.947654
Target:  5'- -cGGCGGCGACCGgGAcgccggcccuuuauGugCGCGAg- -3'
miRNA:   3'- ucCUGCUGCUGGCgUU--------------UugGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 22724 0.8 0.337019
Target:  5'- -cGACGACGACgaCGCAGGGCCGCGGg- -3'
miRNA:   3'- ucCUGCUGCUG--GCGUUUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 22766 0.67 0.957067
Target:  5'- cGGACGAgGACgGgGGAcgucuccggGCCGCGGc- -3'
miRNA:   3'- uCCUGCUgCUGgCgUUU---------UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 23005 0.67 0.939881
Target:  5'- cGGACGGCG-UCGUcucGCCGCGGc- -3'
miRNA:   3'- uCCUGCUGCuGGCGuuuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 23201 0.77 0.495282
Target:  5'- -uGACGACGACCGCGAcgcgGGCCGCu--- -3'
miRNA:   3'- ucCUGCUGCUGGCGUU----UUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 23239 0.73 0.689671
Target:  5'- cGGaGACGACGuCCGCGGu-CCGCGGg- -3'
miRNA:   3'- -UC-CUGCUGCuGGCGUUuuGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 23542 0.67 0.947654
Target:  5'- cGGACGACGAggaggcgggggugcCCGCGAGGgccCCGgGGg- -3'
miRNA:   3'- uCCUGCUGCU--------------GGCGUUUU---GGCgCUau -5'
5126 3' -53.4 NC_001798.1 + 23628 0.68 0.912905
Target:  5'- cGGacccccGCGGCGACCGC-GGGCCGCc--- -3'
miRNA:   3'- uCC------UGCUGCUGGCGuUUUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 23680 0.69 0.899745
Target:  5'- cGGugGcCGGCCGCGAcgccacgGGCCGCu--- -3'
miRNA:   3'- uCCugCuGCUGGCGUU-------UUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 24334 0.68 0.918793
Target:  5'- -cGACGACGGCgGCGAcgccAACCGCc--- -3'
miRNA:   3'- ucCUGCUGCUGgCGUU----UUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 24364 0.66 0.960773
Target:  5'- cGGcGACGACGcCCGCGGGaagcccGCCGCc--- -3'
miRNA:   3'- -UC-CUGCUGCuGGCGUUU------UGGCGcuau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.