miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5126 3' -53.4 NC_001798.1 + 71 0.66 0.96751
Target:  5'- cGGGCGGCGGCgGCGggcGGGCgGCa--- -3'
miRNA:   3'- uCCUGCUGCUGgCGU---UUUGgCGcuau -5'
5126 3' -53.4 NC_001798.1 + 242 0.67 0.944538
Target:  5'- cAGGACGGgGACUaGCAGGcuguGCCGCa--- -3'
miRNA:   3'- -UCCUGCUgCUGG-CGUUU----UGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 2273 0.71 0.815474
Target:  5'- cGGGGCGGCGcAgCGCGcgGCCaGCGAg- -3'
miRNA:   3'- -UCCUGCUGC-UgGCGUuuUGG-CGCUau -5'
5126 3' -53.4 NC_001798.1 + 2402 0.69 0.89378
Target:  5'- cAGGGCGGCGGCCGagggcGCCGgCGuGUGg -3'
miRNA:   3'- -UCCUGCUGCUGGCguuu-UGGC-GC-UAU- -5'
5126 3' -53.4 NC_001798.1 + 2507 0.72 0.740195
Target:  5'- gGGGcGCGGCGGCCGCG--GCgGCGGc- -3'
miRNA:   3'- -UCC-UGCUGCUGGCGUuuUGgCGCUau -5'
5126 3' -53.4 NC_001798.1 + 2560 0.68 0.918793
Target:  5'- cGGGAgGgGCGGCCGCGGGGCgGgGGg- -3'
miRNA:   3'- -UCCUgC-UGCUGGCGUUUUGgCgCUau -5'
5126 3' -53.4 NC_001798.1 + 2686 0.67 0.939881
Target:  5'- cGGGCG-CGGCgaGCGAGucgGCCGCGGc- -3'
miRNA:   3'- uCCUGCuGCUGg-CGUUU---UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 2767 0.67 0.939881
Target:  5'- cGGcGGCGGCGGCgGCGGAGCucagcaggCGCGGg- -3'
miRNA:   3'- -UC-CUGCUGCUGgCGUUUUG--------GCGCUau -5'
5126 3' -53.4 NC_001798.1 + 3238 0.7 0.857244
Target:  5'- cAGGGCGGCGAgcacccCCGCGGcGCCGUa--- -3'
miRNA:   3'- -UCCUGCUGCU------GGCGUUuUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 3319 0.72 0.759791
Target:  5'- cGGGGCGGCGGCgGCGGcgggcuucCCGCGGg- -3'
miRNA:   3'- -UCCUGCUGCUGgCGUUuu------GGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 4850 0.66 0.96751
Target:  5'- cGGGGCGACGGuCCGgGuucgggguGGGCgGCGGUc -3'
miRNA:   3'- -UCCUGCUGCU-GGCgU--------UUUGgCGCUAu -5'
5126 3' -53.4 NC_001798.1 + 5172 0.67 0.952721
Target:  5'- cGGGuagauccUGGCGGCCGCGucgguAGCCGCGc-- -3'
miRNA:   3'- uCCU-------GCUGCUGGCGUu----UUGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 5457 0.7 0.824205
Target:  5'- cGGGCGGCuuCCGCuuccgcCCGCGAUGc -3'
miRNA:   3'- uCCUGCUGcuGGCGuuuu--GGCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 5636 0.66 0.959685
Target:  5'- gGGGGCGG-GGCCGCAGggUaaaagaagugagaaCGCGAa- -3'
miRNA:   3'- -UCCUGCUgCUGGCGUUuuG--------------GCGCUau -5'
5126 3' -53.4 NC_001798.1 + 5774 0.66 0.959685
Target:  5'- gGGGGCGG-GGCCGCAGggUaaaagaagugagaaCGCGAa- -3'
miRNA:   3'- -UCCUGCUgCUGGCGUUuuG--------------GCGCUau -5'
5126 3' -53.4 NC_001798.1 + 6011 0.71 0.815474
Target:  5'- cGGGACGGCaGCgGCGGcAUCGCGAa- -3'
miRNA:   3'- -UCCUGCUGcUGgCGUUuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 6362 0.68 0.924435
Target:  5'- cGGGGgGACgGGCCGgGGGGCCGgGGg- -3'
miRNA:   3'- -UCCUgCUG-CUGGCgUUUUGGCgCUau -5'
5126 3' -53.4 NC_001798.1 + 6808 0.67 0.934979
Target:  5'- gAGGACcgagaGGCGGCC--AGAACUGCGGUGa -3'
miRNA:   3'- -UCCUG-----CUGCUGGcgUUUUGGCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 6869 0.67 0.948953
Target:  5'- cGGACGuGCGAUCGgAuc-CCGCGAg- -3'
miRNA:   3'- uCCUGC-UGCUGGCgUuuuGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 7194 0.67 0.939881
Target:  5'- cGGGGCGGCGACCaUGAuccGGCgGCGGg- -3'
miRNA:   3'- -UCCUGCUGCUGGcGUU---UUGgCGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.