miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5126 3' -53.4 NC_001798.1 + 154409 0.66 0.96751
Target:  5'- cGGGCGGCGGCgGCGggcGGGCgGCa--- -3'
miRNA:   3'- uCCUGCUGCUGgCGU---UUUGgCGcuau -5'
5126 3' -53.4 NC_001798.1 + 153969 0.71 0.797505
Target:  5'- gAGGACG-CGGCCgGCGcgcucucGACCGCGGUu -3'
miRNA:   3'- -UCCUGCuGCUGG-CGUu------UUGGCGCUAu -5'
5126 3' -53.4 NC_001798.1 + 153356 0.66 0.973383
Target:  5'- cGGucCGAUGACCGCcucGGCCGCc--- -3'
miRNA:   3'- uCCu-GCUGCUGGCGuu-UUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 152947 0.72 0.769419
Target:  5'- gGGGAUGGCGGCCG--GGACCGCc--- -3'
miRNA:   3'- -UCCUGCUGCUGGCguUUUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 152225 0.71 0.815474
Target:  5'- gGGGucugccGCGGCGGCCGCucgGGGCCGgGGUc -3'
miRNA:   3'- -UCC------UGCUGCUGGCGu--UUUGGCgCUAu -5'
5126 3' -53.4 NC_001798.1 + 151177 0.67 0.934979
Target:  5'- gGGGugGGCGACaggGCGcGGACCGUGu-- -3'
miRNA:   3'- -UCCugCUGCUGg--CGU-UUUGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 150749 0.74 0.658686
Target:  5'- cGGcACGACGGCCGCGAcggcagGGCCGCc--- -3'
miRNA:   3'- uCC-UGCUGCUGGCGUU------UUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 150456 0.82 0.272877
Target:  5'- cGGGGCGACGGCCGCGcggGGGCgCGCGGc- -3'
miRNA:   3'- -UCCUGCUGCUGGCGU---UUUG-GCGCUau -5'
5126 3' -53.4 NC_001798.1 + 150377 0.67 0.934979
Target:  5'- cGGGCGGCGcgggcccgGCCGCGu--CCGCGc-- -3'
miRNA:   3'- uCCUGCUGC--------UGGCGUuuuGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 150201 0.68 0.929302
Target:  5'- gGGGGCGGC-ACCGgGGGuguugguGCCGCGGg- -3'
miRNA:   3'- -UCCUGCUGcUGGCgUUU-------UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 150127 0.76 0.545063
Target:  5'- gAGGACGA-GGCCGCGGGGCC-CGAg- -3'
miRNA:   3'- -UCCUGCUgCUGGCGUUUUGGcGCUau -5'
5126 3' -53.4 NC_001798.1 + 150087 0.71 0.797505
Target:  5'- gGGGGCGagggGCGAgCGCGGGGCgGCGGa- -3'
miRNA:   3'- -UCCUGC----UGCUgGCGUUUUGgCGCUau -5'
5126 3' -53.4 NC_001798.1 + 150003 0.74 0.658686
Target:  5'- cGGGGCGAgCGGCC-CGugGCCGCGGUc -3'
miRNA:   3'- -UCCUGCU-GCUGGcGUuuUGGCGCUAu -5'
5126 3' -53.4 NC_001798.1 + 149959 0.7 0.832755
Target:  5'- uGGGACGACGgagacGCCGaCGGGGgCGCGGc- -3'
miRNA:   3'- -UCCUGCUGC-----UGGC-GUUUUgGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 149935 0.68 0.918793
Target:  5'- gAGGA-GGCGGCgGCG--ACCGCGGc- -3'
miRNA:   3'- -UCCUgCUGCUGgCGUuuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 149456 0.67 0.934979
Target:  5'- aGGGuGCGGCGGCuccaCGCGgGGGCCGCGGc- -3'
miRNA:   3'- -UCC-UGCUGCUG----GCGU-UUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 149293 0.71 0.788285
Target:  5'- cGGGugGcGCGACCG-GAGGCCGUGGa- -3'
miRNA:   3'- -UCCugC-UGCUGGCgUUUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 144328 0.67 0.944538
Target:  5'- aGGGGCGGCG-UCGCAucGCC-CGAc- -3'
miRNA:   3'- -UCCUGCUGCuGGCGUuuUGGcGCUau -5'
5126 3' -53.4 NC_001798.1 + 142950 0.68 0.906772
Target:  5'- cGGG-GACGGCCggGCAGAGCCGCc--- -3'
miRNA:   3'- uCCUgCUGCUGG--CGUUUUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 142481 0.66 0.970551
Target:  5'- cGGGACGGCccccgaGGCggCGCGGGGgUGCGAUAa -3'
miRNA:   3'- -UCCUGCUG------CUG--GCGUUUUgGCGCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.