miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5126 3' -53.4 NC_001798.1 + 142410 0.67 0.957067
Target:  5'- cGGaguGCGACGGCCGgCAuccuGACgGUGGUGu -3'
miRNA:   3'- uCC---UGCUGCUGGC-GUu---UUGgCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 137483 0.72 0.769419
Target:  5'- gGGGAgGGgGGCCgggGCAGAGCCGCGu-- -3'
miRNA:   3'- -UCCUgCUgCUGG---CGUUUUGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 137169 0.69 0.900396
Target:  5'- cAGGACGcUGGUCGCGguAAACCGCGGc- -3'
miRNA:   3'- -UCCUGCuGCUGGCGU--UUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 137031 1.07 0.007181
Target:  5'- gAGGACGACGACCGCAAAACCGCGAUAc -3'
miRNA:   3'- -UCCUGCUGCUGGCGUUUUGGCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 134552 0.67 0.944538
Target:  5'- -cGACGAgGACCGCGcguuuuGCgCGCGAa- -3'
miRNA:   3'- ucCUGCUgCUGGCGUuu----UG-GCGCUau -5'
5126 3' -53.4 NC_001798.1 + 134163 0.71 0.788285
Target:  5'- cGGGGCcgucGCGGCCGCccgcGCCGCGAc- -3'
miRNA:   3'- -UCCUGc---UGCUGGCGuuu-UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 130680 0.81 0.313751
Target:  5'- cAGGGCGGCGAUCGUguucaacGAGACCGCGGc- -3'
miRNA:   3'- -UCCUGCUGCUGGCG-------UUUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 129334 0.72 0.730246
Target:  5'- uGGAgGACGGCCGCGGAGcgcCCGcCGGg- -3'
miRNA:   3'- uCCUgCUGCUGGCGUUUU---GGC-GCUau -5'
5126 3' -53.4 NC_001798.1 + 128416 0.75 0.606717
Target:  5'- cGGGGCcuGACGACCGCcuccacGCUGCGGUGg -3'
miRNA:   3'- -UCCUG--CUGCUGGCGuuu---UGGCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 128249 0.7 0.857244
Target:  5'- uGGA-GGCGGCCgGCAugguGGACCGCGGg- -3'
miRNA:   3'- uCCUgCUGCUGG-CGU----UUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 126123 0.66 0.973383
Target:  5'- gGGGACGGCGACCugGCGGA--CG-GAUGg -3'
miRNA:   3'- -UCCUGCUGCUGG--CGUUUugGCgCUAU- -5'
5126 3' -53.4 NC_001798.1 + 125412 0.69 0.879843
Target:  5'- cGcGCGACGGCCGagaAGAGCgGCGAg- -3'
miRNA:   3'- uCcUGCUGCUGGCg--UUUUGgCGCUau -5'
5126 3' -53.4 NC_001798.1 + 124578 0.69 0.899745
Target:  5'- gAGGGCGGC-ACCGgGGAaacaggcACCGCGGg- -3'
miRNA:   3'- -UCCUGCUGcUGGCgUUU-------UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 122371 0.67 0.934979
Target:  5'- cGGGCGACGcgcCCGCccc-CCGCGGc- -3'
miRNA:   3'- uCCUGCUGCu--GGCGuuuuGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 122185 0.7 0.832755
Target:  5'- cGuGcCGGgGACCGCcAAGCCGCGAUc -3'
miRNA:   3'- uC-CuGCUgCUGGCGuUUUGGCGCUAu -5'
5126 3' -53.4 NC_001798.1 + 120393 0.69 0.879122
Target:  5'- cGGGCGAUGuCCGCGGGGgccgaucCCGUGAg- -3'
miRNA:   3'- uCCUGCUGCuGGCGUUUU-------GGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 119343 0.74 0.648302
Target:  5'- cAGGACGGCGAaCGCAGGcuGCCGCu--- -3'
miRNA:   3'- -UCCUGCUGCUgGCGUUU--UGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 116368 0.68 0.924435
Target:  5'- cGuGGCGACGGCCGacuuuAACCGCa--- -3'
miRNA:   3'- uC-CUGCUGCUGGCguu--UUGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 115904 0.67 0.957067
Target:  5'- gGGGcguuCGAgGACCGCAGcuACCcgGCGGUGu -3'
miRNA:   3'- -UCCu---GCUgCUGGCGUUu-UGG--CGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 115479 0.72 0.730246
Target:  5'- gGGGGCGugaaccACGACCccguCGAGGCCGCGAa- -3'
miRNA:   3'- -UCCUGC------UGCUGGc---GUUUUGGCGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.