miRNA display CGI


Results 41 - 60 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5126 3' -53.4 NC_001798.1 + 5172 0.67 0.952721
Target:  5'- cGGGuagauccUGGCGGCCGCGucgguAGCCGCGc-- -3'
miRNA:   3'- uCCU-------GCUGCUGGCGUu----UUGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 52370 0.67 0.948953
Target:  5'- uGGGCGAC-ACCGCGGcgcGCCGCc--- -3'
miRNA:   3'- uCCUGCUGcUGGCGUUu--UGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 9098 0.67 0.948953
Target:  5'- gAGGGCcACGggaaagGCCGCGGGggagccGCCGCGAg- -3'
miRNA:   3'- -UCCUGcUGC------UGGCGUUU------UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 79387 0.67 0.948953
Target:  5'- cGGGCG-CGGgCGCGGAGuCCGCGc-- -3'
miRNA:   3'- uCCUGCuGCUgGCGUUUU-GGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 97396 0.67 0.948953
Target:  5'- -uGACGACG-CCGCu--GCUGCGGc- -3'
miRNA:   3'- ucCUGCUGCuGGCGuuuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 6869 0.67 0.948953
Target:  5'- cGGACGuGCGAUCGgAuc-CCGCGAg- -3'
miRNA:   3'- uCCUGC-UGCUGGCgUuuuGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 30344 0.67 0.948953
Target:  5'- -uGACGACGACCuuc--ACCGCGAc- -3'
miRNA:   3'- ucCUGCUGCUGGcguuuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 52956 0.67 0.948953
Target:  5'- cGGGCGcACGuguCCGgGAGGCgCGCGAc- -3'
miRNA:   3'- uCCUGC-UGCu--GGCgUUUUG-GCGCUau -5'
5126 3' -53.4 NC_001798.1 + 68263 0.67 0.948953
Target:  5'- cAGGAUGAcaaccggaacgcCGACCGCcccAAACCGCucGGUGc -3'
miRNA:   3'- -UCCUGCU------------GCUGGCGu--UUUGGCG--CUAU- -5'
5126 3' -53.4 NC_001798.1 + 23542 0.67 0.947654
Target:  5'- cGGACGACGAggaggcgggggugcCCGCGAGGgccCCGgGGg- -3'
miRNA:   3'- uCCUGCUGCU--------------GGCGUUUU---GGCgCUau -5'
5126 3' -53.4 NC_001798.1 + 21747 0.67 0.947654
Target:  5'- -cGGCGGCGACCGgGAcgccggcccuuuauGugCGCGAg- -3'
miRNA:   3'- ucCUGCUGCUGGCgUU--------------UugGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 34968 0.67 0.944538
Target:  5'- gAGGG-GGCGGCCGCcGAGgUGCGGg- -3'
miRNA:   3'- -UCCUgCUGCUGGCGuUUUgGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 48210 0.67 0.944538
Target:  5'- uGGGACaugucGCGGCCGCAc-ACCGaCGAa- -3'
miRNA:   3'- -UCCUGc----UGCUGGCGUuuUGGC-GCUau -5'
5126 3' -53.4 NC_001798.1 + 242 0.67 0.944538
Target:  5'- cAGGACGGgGACUaGCAGGcuguGCCGCa--- -3'
miRNA:   3'- -UCCUGCUgCUGG-CGUUU----UGGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 42497 0.67 0.944538
Target:  5'- cGGGGCGGgGACCGguAGGCacaCGCGc-- -3'
miRNA:   3'- -UCCUGCUgCUGGCguUUUG---GCGCuau -5'
5126 3' -53.4 NC_001798.1 + 46218 0.67 0.944538
Target:  5'- cGGAgGgACGGCUGUAuGACCGUGGc- -3'
miRNA:   3'- uCCUgC-UGCUGGCGUuUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 77735 0.67 0.944538
Target:  5'- gAGG-CGGCgcugGACCGCGucgaGAACCGCGc-- -3'
miRNA:   3'- -UCCuGCUG----CUGGCGU----UUUGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 97712 0.67 0.944538
Target:  5'- cGGGCGcuGCGugCGCGAGcAgCGCGGg- -3'
miRNA:   3'- uCCUGC--UGCugGCGUUU-UgGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 144328 0.67 0.944538
Target:  5'- aGGGGCGGCG-UCGCAucGCC-CGAc- -3'
miRNA:   3'- -UCCUGCUGCuGGCGUuuUGGcGCUau -5'
5126 3' -53.4 NC_001798.1 + 134552 0.67 0.944538
Target:  5'- -cGACGAgGACCGCGcguuuuGCgCGCGAa- -3'
miRNA:   3'- ucCUGCUgCUGGCGUuu----UG-GCGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.