miRNA display CGI


Results 61 - 80 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5126 3' -53.4 NC_001798.1 + 86451 0.67 0.944083
Target:  5'- gGGGACGGgGGCCgguucgugagccuGCuucGGGCCGCGGg- -3'
miRNA:   3'- -UCCUGCUgCUGG-------------CGu--UUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 43523 0.67 0.939881
Target:  5'- uAGG-CGGCGGCCGCGucucCCGCc--- -3'
miRNA:   3'- -UCCuGCUGCUGGCGUuuu-GGCGcuau -5'
5126 3' -53.4 NC_001798.1 + 2686 0.67 0.939881
Target:  5'- cGGGCG-CGGCgaGCGAGucgGCCGCGGc- -3'
miRNA:   3'- uCCUGCuGCUGg-CGUUU---UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 2767 0.67 0.939881
Target:  5'- cGGcGGCGGCGGCgGCGGAGCucagcaggCGCGGg- -3'
miRNA:   3'- -UC-CUGCUGCUGgCGUUUUG--------GCGCUau -5'
5126 3' -53.4 NC_001798.1 + 23005 0.67 0.939881
Target:  5'- cGGACGGCG-UCGUcucGCCGCGGc- -3'
miRNA:   3'- uCCUGCUGCuGGCGuuuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 24582 0.67 0.939881
Target:  5'- cGGA-GGCgGGCCGCGugGCCGUGGa- -3'
miRNA:   3'- uCCUgCUG-CUGGCGUuuUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 35391 0.67 0.939881
Target:  5'- aAGGGCGuggggcCGGCCGCcGGAugcCCGCGGg- -3'
miRNA:   3'- -UCCUGCu-----GCUGGCGuUUU---GGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 56782 0.67 0.939881
Target:  5'- gGGGGCccUGGCCGCcGAcgGCCGCGGa- -3'
miRNA:   3'- -UCCUGcuGCUGGCGuUU--UGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 99741 0.67 0.939881
Target:  5'- uGGGCGAcugcauCGGCCGgGAugcCCGCGAg- -3'
miRNA:   3'- uCCUGCU------GCUGGCgUUuu-GGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 7194 0.67 0.939881
Target:  5'- cGGGGCGGCGACCaUGAuccGGCgGCGGg- -3'
miRNA:   3'- -UCCUGCUGCUGGcGUU---UUGgCGCUau -5'
5126 3' -53.4 NC_001798.1 + 6808 0.67 0.934979
Target:  5'- gAGGACcgagaGGCGGCC--AGAACUGCGGUGa -3'
miRNA:   3'- -UCCUG-----CUGCUGGcgUUUUGGCGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 79274 0.67 0.934979
Target:  5'- --cGCGGCGGCCGCGGAccugGCCccguggGCGGUGg -3'
miRNA:   3'- uccUGCUGCUGGCGUUU----UGG------CGCUAU- -5'
5126 3' -53.4 NC_001798.1 + 85222 0.67 0.934979
Target:  5'- gAGGACGugGAgaGCGAcgUCGCGc-- -3'
miRNA:   3'- -UCCUGCugCUggCGUUuuGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 122371 0.67 0.934979
Target:  5'- cGGGCGACGcgcCCGCccc-CCGCGGc- -3'
miRNA:   3'- uCCUGCUGCu--GGCGuuuuGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 150377 0.67 0.934979
Target:  5'- cGGGCGGCGcgggcccgGCCGCGu--CCGCGc-- -3'
miRNA:   3'- uCCUGCUGC--------UGGCGUuuuGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 151177 0.67 0.934979
Target:  5'- gGGGugGGCGACaggGCGcGGACCGUGu-- -3'
miRNA:   3'- -UCCugCUGCUGg--CGU-UUUGGCGCuau -5'
5126 3' -53.4 NC_001798.1 + 86113 0.67 0.934979
Target:  5'- cGGACGcCcGCCGC---GCCGCGGUc -3'
miRNA:   3'- uCCUGCuGcUGGCGuuuUGGCGCUAu -5'
5126 3' -53.4 NC_001798.1 + 149456 0.67 0.934979
Target:  5'- aGGGuGCGGCGGCuccaCGCGgGGGCCGCGGc- -3'
miRNA:   3'- -UCC-UGCUGCUG----GCGU-UUUGGCGCUau -5'
5126 3' -53.4 NC_001798.1 + 67605 0.68 0.929831
Target:  5'- cGGACGGaGACCGCGcu-CCgGCGAg- -3'
miRNA:   3'- uCCUGCUgCUGGCGUuuuGG-CGCUau -5'
5126 3' -53.4 NC_001798.1 + 150201 0.68 0.929302
Target:  5'- gGGGGCGGC-ACCGgGGGuguugguGCCGCGGg- -3'
miRNA:   3'- -UCCUGCUGcUGGCgUUU-------UGGCGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.