miRNA display CGI


Results 61 - 80 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 3' -59.6 NC_001798.1 + 146439 0.67 0.713179
Target:  5'- uGCGgaGCCCCCGgagcccgcgGCCGCaGCCGagcaGCGCCg- -3'
miRNA:   3'- -UGC--UGGGGGU---------UGGUG-CGGC----UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 25450 0.67 0.713179
Target:  5'- cCGcCCCCCGGCggCGCGCCcGcCGCCUUc -3'
miRNA:   3'- uGCuGGGGGUUG--GUGCGG-CuGUGGAA- -5'
5127 3' -59.6 NC_001798.1 + 32578 0.67 0.713179
Target:  5'- cGCGGCCCCCGcguggAgC-CGCCG-CACCc- -3'
miRNA:   3'- -UGCUGGGGGU-----UgGuGCGGCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 39676 0.67 0.713179
Target:  5'- cCGGCCCCggcggCGACCuCGCCGccCGCCUc -3'
miRNA:   3'- uGCUGGGG-----GUUGGuGCGGCu-GUGGAa -5'
5127 3' -59.6 NC_001798.1 + 47977 0.67 0.713179
Target:  5'- gGCGACCCgC--CCAgGCCGACuCCg- -3'
miRNA:   3'- -UGCUGGGgGuuGGUgCGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 54646 0.67 0.713179
Target:  5'- cGCGcCCCCCGAgCAgcgGCCGGCAgCCg- -3'
miRNA:   3'- -UGCuGGGGGUUgGUg--CGGCUGU-GGaa -5'
5127 3' -59.6 NC_001798.1 + 128370 0.67 0.713179
Target:  5'- gGCGACgCaaAACCAgGCCGACuGCCa- -3'
miRNA:   3'- -UGCUGgGggUUGGUgCGGCUG-UGGaa -5'
5127 3' -59.6 NC_001798.1 + 85357 0.67 0.712202
Target:  5'- -gGGCCCUUcGCCGCggcguccGUCGACACCUUc -3'
miRNA:   3'- ugCUGGGGGuUGGUG-------CGGCUGUGGAA- -5'
5127 3' -59.6 NC_001798.1 + 147145 0.67 0.707306
Target:  5'- uCGAUUCCCGGCCGggggucccggguagcCGcCCGGCGCCg- -3'
miRNA:   3'- uGCUGGGGGUUGGU---------------GC-GGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 94423 0.67 0.703378
Target:  5'- uGCG-CCCCCAGCCuaACGgCCGGCcagacggcccccGCCg- -3'
miRNA:   3'- -UGCuGGGGGUUGG--UGC-GGCUG------------UGGaa -5'
5127 3' -59.6 NC_001798.1 + 143511 0.67 0.703378
Target:  5'- -gGACCCUCucuucccCCACGcCCGACAUCa- -3'
miRNA:   3'- ugCUGGGGGuu-----GGUGC-GGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 27874 0.67 0.703378
Target:  5'- cCGGCUCCgGGCCuACGCCGAgcccaGCCg- -3'
miRNA:   3'- uGCUGGGGgUUGG-UGCGGCUg----UGGaa -5'
5127 3' -59.6 NC_001798.1 + 31169 0.67 0.703378
Target:  5'- gGCGACCcgcggaaccuCCCAGCC-CGCCGcgacccgaccgGCGCCc- -3'
miRNA:   3'- -UGCUGG----------GGGUUGGuGCGGC-----------UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 70875 0.67 0.703378
Target:  5'- cUGACCCCCc-UCACGCgGGC-CCUg -3'
miRNA:   3'- uGCUGGGGGuuGGUGCGgCUGuGGAa -5'
5127 3' -59.6 NC_001798.1 + 126284 0.67 0.703378
Target:  5'- aGCGGCCCCUccCCcCGagaCGGCGCCg- -3'
miRNA:   3'- -UGCUGGGGGuuGGuGCg--GCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 147220 0.67 0.703378
Target:  5'- -gGGCCCCCGGCggaGCGCgGGgGCCc- -3'
miRNA:   3'- ugCUGGGGGUUGg--UGCGgCUgUGGaa -5'
5127 3' -59.6 NC_001798.1 + 145612 0.67 0.703378
Target:  5'- cGCGA-CCCCGACCcCGCCc-CACCg- -3'
miRNA:   3'- -UGCUgGGGGUUGGuGCGGcuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 129540 0.67 0.693519
Target:  5'- cGCGGCCCU--GCUGCuGCCGACACa-- -3'
miRNA:   3'- -UGCUGGGGguUGGUG-CGGCUGUGgaa -5'
5127 3' -59.6 NC_001798.1 + 77737 0.67 0.693519
Target:  5'- gGCGGCgCUgGACCGCGUCGAgaACCg- -3'
miRNA:   3'- -UGCUGgGGgUUGGUGCGGCUg-UGGaa -5'
5127 3' -59.6 NC_001798.1 + 71613 0.67 0.693519
Target:  5'- gGCGGCguCCUCAGCCagACGCUGGCGCg-- -3'
miRNA:   3'- -UGCUG--GGGGUUGG--UGCGGCUGUGgaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.