miRNA display CGI


Results 41 - 60 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 3' -59.6 NC_001798.1 + 46386 0.66 0.732574
Target:  5'- aGCGAUCCCCcGCgccguCugGCCGGCaggGCCa- -3'
miRNA:   3'- -UGCUGGGGGuUG-----GugCGGCUG---UGGaa -5'
5127 3' -59.6 NC_001798.1 + 118068 0.66 0.732574
Target:  5'- aGCGACCCCgCccuGCUACGCa-GCGCCc- -3'
miRNA:   3'- -UGCUGGGG-Gu--UGGUGCGgcUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 121703 0.66 0.732574
Target:  5'- cGCGGCUCCCGccGCCGCGaCGGaggcggcggccCACCUg -3'
miRNA:   3'- -UGCUGGGGGU--UGGUGCgGCU-----------GUGGAa -5'
5127 3' -59.6 NC_001798.1 + 24502 0.66 0.732574
Target:  5'- cGCG-CCCgCCu-CCGCGCCGGCcgggGCCg- -3'
miRNA:   3'- -UGCuGGG-GGuuGGUGCGGCUG----UGGaa -5'
5127 3' -59.6 NC_001798.1 + 57134 0.66 0.730649
Target:  5'- aGCGGCCCgacgaccgaguaCAGCCGCggGCUGGCGCCc- -3'
miRNA:   3'- -UGCUGGGg-----------GUUGGUG--CGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 68226 0.66 0.722914
Target:  5'- -aGGCCCgCCAcCC-CGCCGcGCGCCa- -3'
miRNA:   3'- ugCUGGG-GGUuGGuGCGGC-UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 3855 0.66 0.722914
Target:  5'- gGCGGCUgucgCCCAGCC-CGCCGuacagcacGCGCCc- -3'
miRNA:   3'- -UGCUGG----GGGUUGGuGCGGC--------UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 58007 0.66 0.722914
Target:  5'- gGCGAUcaCCCCGACCGCcgGCuCGcCGCCa- -3'
miRNA:   3'- -UGCUG--GGGGUUGGUG--CG-GCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 92502 0.66 0.722914
Target:  5'- gGCGGCCgCC-ACCugGCCcccaGCACCc- -3'
miRNA:   3'- -UGCUGGgGGuUGGugCGGc---UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 107283 0.66 0.722914
Target:  5'- cCGACCgCCUGGCCagACGCCaACGCCc- -3'
miRNA:   3'- uGCUGG-GGGUUGG--UGCGGcUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 115333 0.66 0.722914
Target:  5'- cCG-CCCCCGGCCAC-CCGGaGCCc- -3'
miRNA:   3'- uGCuGGGGGUUGGUGcGGCUgUGGaa -5'
5127 3' -59.6 NC_001798.1 + 128103 0.66 0.722914
Target:  5'- gGCGAUCCCCAACgCACuGCCcccccAUAUCUUg -3'
miRNA:   3'- -UGCUGGGGGUUG-GUG-CGGc----UGUGGAA- -5'
5127 3' -59.6 NC_001798.1 + 150379 0.66 0.722914
Target:  5'- gGCGGCgcgggCCCGGCCGCGUCcgcgcucgcaGACACCa- -3'
miRNA:   3'- -UGCUGg----GGGUUGGUGCGG----------CUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 3244 0.66 0.722914
Target:  5'- gGCGAgcaCCCCC-GCgGCGCCGuagccggcggGCACCg- -3'
miRNA:   3'- -UGCU---GGGGGuUGgUGCGGC----------UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 1694 0.66 0.721944
Target:  5'- -aGACCCCCGGCCcgaacacGCGgCCGGagGCCa- -3'
miRNA:   3'- ugCUGGGGGUUGG-------UGC-GGCUg-UGGaa -5'
5127 3' -59.6 NC_001798.1 + 134503 0.66 0.721944
Target:  5'- cGCGacaGCCCCCAgugcgcguccuccGCCucgcuCGCCGuCACCa- -3'
miRNA:   3'- -UGC---UGGGGGU-------------UGGu----GCGGCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 92530 0.66 0.720002
Target:  5'- -aGGCCCCCAACCugACGCgGcucugcgagcgggcGCGCCc- -3'
miRNA:   3'- ugCUGGGGGUUGG--UGCGgC--------------UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 54646 0.67 0.713179
Target:  5'- cGCGcCCCCCGAgCAgcgGCCGGCAgCCg- -3'
miRNA:   3'- -UGCuGGGGGUUgGUg--CGGCUGU-GGaa -5'
5127 3' -59.6 NC_001798.1 + 47977 0.67 0.713179
Target:  5'- gGCGACCCgC--CCAgGCCGACuCCg- -3'
miRNA:   3'- -UGCUGGGgGuuGGUgCGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 39676 0.67 0.713179
Target:  5'- cCGGCCCCggcggCGACCuCGCCGccCGCCUc -3'
miRNA:   3'- uGCUGGGG-----GUUGGuGCGGCu-GUGGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.