miRNA display CGI


Results 41 - 60 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 3' -59.6 NC_001798.1 + 25109 0.75 0.260361
Target:  5'- cGCGcCCCCCGaagaagaGCCGCGCgGACGCCc- -3'
miRNA:   3'- -UGCuGGGGGU-------UGGUGCGgCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 25173 0.79 0.149135
Target:  5'- cGCG-CCCCCcGCCcCGCCGACGCCg- -3'
miRNA:   3'- -UGCuGGGGGuUGGuGCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 25225 0.68 0.653674
Target:  5'- cUGACCCgCCGGCC-CGCCGAgGgCCc- -3'
miRNA:   3'- uGCUGGG-GGUUGGuGCGGCUgU-GGaa -5'
5127 3' -59.6 NC_001798.1 + 25277 0.7 0.505571
Target:  5'- aGCcGCCggggCCCAGCCacACGCCGGCGCCc- -3'
miRNA:   3'- -UGcUGG----GGGUUGG--UGCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 25450 0.67 0.713179
Target:  5'- cCGcCCCCCGGCggCGCGCCcGcCGCCUUc -3'
miRNA:   3'- uGCuGGGGGUUG--GUGCGG-CuGUGGAA- -5'
5127 3' -59.6 NC_001798.1 + 25781 0.69 0.593556
Target:  5'- cGCGGgaCCUGGCCuuCGCCGGCGCCg- -3'
miRNA:   3'- -UGCUggGGGUUGGu-GCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 27874 0.67 0.703378
Target:  5'- cCGGCUCCgGGCCuACGCCGAgcccaGCCg- -3'
miRNA:   3'- uGCUGGGGgUUGG-UGCGGCUg----UGGaa -5'
5127 3' -59.6 NC_001798.1 + 27961 0.68 0.653674
Target:  5'- cCGGCgCUCCAGCCGUGCCG-CGCCc- -3'
miRNA:   3'- uGCUG-GGGGUUGGUGCGGCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 27985 0.68 0.653674
Target:  5'- cCGGCgCUCCAGCCGUGCCG-CGCCc- -3'
miRNA:   3'- uGCUG-GGGGUUGGUGCGGCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 28216 0.68 0.643651
Target:  5'- -aGGCCCCgCAcGCCGCGCCuGcCGCCg- -3'
miRNA:   3'- ugCUGGGG-GU-UGGUGCGG-CuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 28360 0.68 0.6276
Target:  5'- gGCGGCCCCCcGCguccccgcccgcggaCGCGCCGcgcgggaagguACGCCUc -3'
miRNA:   3'- -UGCUGGGGGuUG---------------GUGCGGC-----------UGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 29043 0.69 0.573659
Target:  5'- gGCGACCgCC--CCGCGCCGGCuucCCg- -3'
miRNA:   3'- -UGCUGGgGGuuGGUGCGGCUGu--GGaa -5'
5127 3' -59.6 NC_001798.1 + 29870 0.67 0.66368
Target:  5'- -aGGCCCCCccuuuuccccgGACCAC-CCGGCugCg- -3'
miRNA:   3'- ugCUGGGGG-----------UUGGUGcGGCUGugGaa -5'
5127 3' -59.6 NC_001798.1 + 29955 0.66 0.751635
Target:  5'- cCGACCCCCGGCC-CGCUuaagcggucggGGgACCc- -3'
miRNA:   3'- uGCUGGGGGUUGGuGCGG-----------CUgUGGaa -5'
5127 3' -59.6 NC_001798.1 + 30440 0.72 0.423653
Target:  5'- cCGGCCCCCGGCCgaGCGCCagGGCAgCCc- -3'
miRNA:   3'- uGCUGGGGGUUGG--UGCGG--CUGU-GGaa -5'
5127 3' -59.6 NC_001798.1 + 30744 0.76 0.249009
Target:  5'- aACGACCCCCGGacCCGCGUgGAgGCCg- -3'
miRNA:   3'- -UGCUGGGGGUU--GGUGCGgCUgUGGaa -5'
5127 3' -59.6 NC_001798.1 + 31169 0.67 0.703378
Target:  5'- gGCGACCcgcggaaccuCCCAGCC-CGCCGcgacccgaccgGCGCCc- -3'
miRNA:   3'- -UGCUGG----------GGGUUGGuGCGGC-----------UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 32301 0.69 0.583591
Target:  5'- uCGGCCCCCGcgcuGCUGCGCCGcggGgGCCg- -3'
miRNA:   3'- uGCUGGGGGU----UGGUGCGGC---UgUGGaa -5'
5127 3' -59.6 NC_001798.1 + 32366 0.7 0.524714
Target:  5'- gGCGGCCCCgAGCCcggggcccGCGacCCGGCGCCc- -3'
miRNA:   3'- -UGCUGGGGgUUGG--------UGC--GGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 32578 0.67 0.713179
Target:  5'- cGCGGCCCCCGcguggAgC-CGCCG-CACCc- -3'
miRNA:   3'- -UGCUGGGGGU-----UgGuGCGGCuGUGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.