miRNA display CGI


Results 41 - 60 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 3' -59.6 NC_001798.1 + 775 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 715 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 99550 0.7 0.486734
Target:  5'- gACGACCCCCAAgUuuaCCGugGCCUg -3'
miRNA:   3'- -UGCUGGGGGUUgGugcGGCugUGGAa -5'
5127 3' -59.6 NC_001798.1 + 685 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 745 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 78271 0.7 0.496112
Target:  5'- gGCGugCCCCugGACCugGCgGcCGCCg- -3'
miRNA:   3'- -UGCugGGGG--UUGGugCGgCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 87754 0.7 0.505571
Target:  5'- cGCGGCCCUgAGCCGCGCgGcCACg-- -3'
miRNA:   3'- -UGCUGGGGgUUGGUGCGgCuGUGgaa -5'
5127 3' -59.6 NC_001798.1 + 6995 0.7 0.505571
Target:  5'- --uACCCCCAcccaACCagcGCGCCGGCGCUUa -3'
miRNA:   3'- ugcUGGGGGU----UGG---UGCGGCUGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 124349 0.7 0.505571
Target:  5'- aGCGucauCCgCCCGACCAgCGCCGggugGCGCCUc -3'
miRNA:   3'- -UGCu---GG-GGGUUGGU-GCGGC----UGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 145983 0.7 0.505571
Target:  5'- cGCaGCCUCCGGCagCACGCCGACcACCg- -3'
miRNA:   3'- -UGcUGGGGGUUG--GUGCGGCUG-UGGaa -5'
5127 3' -59.6 NC_001798.1 + 25277 0.7 0.505571
Target:  5'- aGCcGCCggggCCCAGCCacACGCCGGCGCCc- -3'
miRNA:   3'- -UGcUGG----GGGUUGG--UGCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 82011 0.7 0.515106
Target:  5'- gGCGACCgCC-GCCGCgGCCGcCGCCa- -3'
miRNA:   3'- -UGCUGGgGGuUGGUG-CGGCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 36011 0.7 0.515106
Target:  5'- cACG-CCCCCcACCGCGCCuuGGCugUUUg -3'
miRNA:   3'- -UGCuGGGGGuUGGUGCGG--CUGugGAA- -5'
5127 3' -59.6 NC_001798.1 + 52992 0.7 0.515106
Target:  5'- gGCGGCCC---GCCACGCCcauaGGCGCCUc -3'
miRNA:   3'- -UGCUGGGgguUGGUGCGG----CUGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 57238 0.7 0.515106
Target:  5'- uUGGCCCCCgGGCgGgGCCGACACgUUu -3'
miRNA:   3'- uGCUGGGGG-UUGgUgCGGCUGUGgAA- -5'
5127 3' -59.6 NC_001798.1 + 147014 0.7 0.515106
Target:  5'- -gGACCCCCGGgCGgGCCGGgGCUUg -3'
miRNA:   3'- ugCUGGGGGUUgGUgCGGCUgUGGAa -5'
5127 3' -59.6 NC_001798.1 + 39521 0.7 0.524714
Target:  5'- aGCuGCUCCCcuCCGCGCCG-CGCCUc -3'
miRNA:   3'- -UGcUGGGGGuuGGUGCGGCuGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 98612 0.7 0.524714
Target:  5'- gGCGGCCCCCcgcGCCucggGCGgCGugGCCg- -3'
miRNA:   3'- -UGCUGGGGGu--UGG----UGCgGCugUGGaa -5'
5127 3' -59.6 NC_001798.1 + 32366 0.7 0.524714
Target:  5'- gGCGGCCCCgAGCCcggggcccGCGacCCGGCGCCc- -3'
miRNA:   3'- -UGCUGGGGgUUGG--------UGC--GGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 52562 0.7 0.524714
Target:  5'- aGCGGCUgCUgGGCCugGCCGACACg-- -3'
miRNA:   3'- -UGCUGG-GGgUUGGugCGGCUGUGgaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.