miRNA display CGI


Results 21 - 40 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 3' -59.6 NC_001798.1 + 145534 0.73 0.373661
Target:  5'- cGCGcGCCCCCGcccgGCCgcccgcgucGCGCCGGCGCCc- -3'
miRNA:   3'- -UGC-UGGGGGU----UGG---------UGCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 83745 0.72 0.381711
Target:  5'- aGCGGCCCCCAgaaacaGCCcCGCCGccagcaacagaaGCGCCg- -3'
miRNA:   3'- -UGCUGGGGGU------UGGuGCGGC------------UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 114838 0.72 0.381711
Target:  5'- cCGugCCCCGccugACgCACGCCGACACg-- -3'
miRNA:   3'- uGCugGGGGU----UG-GUGCGGCUGUGgaa -5'
5127 3' -59.6 NC_001798.1 + 32636 0.72 0.381711
Target:  5'- -aGGcCCCCCGACUAC-CCGACGCCc- -3'
miRNA:   3'- ugCU-GGGGGUUGGUGcGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 24324 0.72 0.389876
Target:  5'- cGCGaACCCCCGACgacgGCGgCGACGCCa- -3'
miRNA:   3'- -UGC-UGGGGGUUGg---UGCgGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 100654 0.72 0.401497
Target:  5'- cACGACCUgcgcuuugCCGAcaucgacacggucauCCGCGCCGACGCCa- -3'
miRNA:   3'- -UGCUGGG--------GGUU---------------GGUGCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 70928 0.72 0.421059
Target:  5'- gACGACCCCCGAUCGgggcgcggugguccCGCCGccGCugCUg -3'
miRNA:   3'- -UGCUGGGGGUUGGU--------------GCGGC--UGugGAa -5'
5127 3' -59.6 NC_001798.1 + 30440 0.72 0.423653
Target:  5'- cCGGCCCCCGGCCgaGCGCCagGGCAgCCc- -3'
miRNA:   3'- uGCUGGGGGUUGG--UGCGG--CUGU-GGaa -5'
5127 3' -59.6 NC_001798.1 + 47908 0.71 0.450105
Target:  5'- -gGACCCCCAAaaugaCGCGCgGgGCGCCUa -3'
miRNA:   3'- ugCUGGGGGUUg----GUGCGgC-UGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 82355 0.71 0.459123
Target:  5'- cGCGACCaaaCCcGCCGCGCgGACGCg-- -3'
miRNA:   3'- -UGCUGGg--GGuUGGUGCGgCUGUGgaa -5'
5127 3' -59.6 NC_001798.1 + 1167 0.71 0.459123
Target:  5'- gGCGGUCCCCAccaccuCCACGCCGcCGCCc- -3'
miRNA:   3'- -UGCUGGGGGUu-----GGUGCGGCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 121094 0.71 0.459123
Target:  5'- cACGcACCCCCcacCCACGCCccuuccGGCACCg- -3'
miRNA:   3'- -UGC-UGGGGGuu-GGUGCGG------CUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 24863 0.71 0.47744
Target:  5'- gUGGCCgCCGugCGCGCCGugAgCCUg -3'
miRNA:   3'- uGCUGGgGGUugGUGCGGCugU-GGAa -5'
5127 3' -59.6 NC_001798.1 + 80502 0.71 0.47744
Target:  5'- uCGACgCCCu-CCugGCCGcACGCCUg -3'
miRNA:   3'- uGCUGgGGGuuGGugCGGC-UGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 83879 0.7 0.483006
Target:  5'- gGCGACCCCCGGCCcggGCGCUccggaagagugguGCGCCg- -3'
miRNA:   3'- -UGCUGGGGGUUGG---UGCGGc------------UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 99550 0.7 0.486734
Target:  5'- gACGACCCCCAAgUuuaCCGugGCCUg -3'
miRNA:   3'- -UGCUGGGGGUUgGugcGGCugUGGAa -5'
5127 3' -59.6 NC_001798.1 + 835 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 685 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 895 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 865 0.7 0.486734
Target:  5'- cCGACCCCCGcCCGC-CCGACcCCc- -3'
miRNA:   3'- uGCUGGGGGUuGGUGcGGCUGuGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.