miRNA display CGI


Results 21 - 40 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 3' -59.6 NC_001798.1 + 7182 0.66 0.761018
Target:  5'- -gGGCCCCCGcACCGgGgCGGCgACCa- -3'
miRNA:   3'- ugCUGGGGGU-UGGUgCgGCUG-UGGaa -5'
5127 3' -59.6 NC_001798.1 + 7527 0.67 0.66368
Target:  5'- -gGACCCCuCAucGCCGCGCCaACGCa-- -3'
miRNA:   3'- ugCUGGGG-GU--UGGUGCGGcUGUGgaa -5'
5127 3' -59.6 NC_001798.1 + 7780 0.66 0.761018
Target:  5'- cACGACCCaCCGcCCcCGCUGGCgggaGCCa- -3'
miRNA:   3'- -UGCUGGG-GGUuGGuGCGGCUG----UGGaa -5'
5127 3' -59.6 NC_001798.1 + 11432 0.66 0.761018
Target:  5'- aACG-CCCCCGggguuguaaAUCugGCCGcggggGCGCCUg -3'
miRNA:   3'- -UGCuGGGGGU---------UGGugCGGC-----UGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 15554 0.69 0.563767
Target:  5'- cCGGCCCCgGGCguUGCCGcCGCCg- -3'
miRNA:   3'- uGCUGGGGgUUGguGCGGCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 20494 0.76 0.249009
Target:  5'- cGCGAUCCCCGGaagaCugGCCGGgGCCUg -3'
miRNA:   3'- -UGCUGGGGGUUg---GugCGGCUgUGGAa -5'
5127 3' -59.6 NC_001798.1 + 21680 0.66 0.761018
Target:  5'- gUGGCCCCCuucGCgAUGCCGcCGCUg- -3'
miRNA:   3'- uGCUGGGGGu--UGgUGCGGCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 22810 0.66 0.770291
Target:  5'- gGCGGCCCCgGAUCuccggauccaGCCGACggACCg- -3'
miRNA:   3'- -UGCUGGGGgUUGGug--------CGGCUG--UGGaa -5'
5127 3' -59.6 NC_001798.1 + 23296 0.88 0.039392
Target:  5'- cGCGACCCCCGgcGCCcCGCCGACACCa- -3'
miRNA:   3'- -UGCUGGGGGU--UGGuGCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 23347 0.68 0.603548
Target:  5'- gGCGcGCCCCCcGCCgGCGCuCGGcCGCCUc -3'
miRNA:   3'- -UGC-UGGGGGuUGG-UGCG-GCU-GUGGAa -5'
5127 3' -59.6 NC_001798.1 + 23493 0.67 0.683611
Target:  5'- cGCG-CCCCC-GCCAgCGCCGcagaccACGCCg- -3'
miRNA:   3'- -UGCuGGGGGuUGGU-GCGGC------UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 23582 0.66 0.761018
Target:  5'- gGCGGCgCCCCGGCCGaGCCcGC-CCa- -3'
miRNA:   3'- -UGCUG-GGGGUUGGUgCGGcUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 23629 0.66 0.732574
Target:  5'- -gGACCCCCGcggcgACCGCggGCCGccuggaGCGCCg- -3'
miRNA:   3'- ugCUGGGGGU-----UGGUG--CGGC------UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 23719 0.69 0.593556
Target:  5'- gGCGGCCCCgGcgggucgaGCUggACGCCGACGCg-- -3'
miRNA:   3'- -UGCUGGGGgU--------UGG--UGCGGCUGUGgaa -5'
5127 3' -59.6 NC_001798.1 + 24324 0.72 0.389876
Target:  5'- cGCGaACCCCCGACgacgGCGgCGACGCCa- -3'
miRNA:   3'- -UGC-UGGGGGUUGg---UGCgGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 24368 0.67 0.66368
Target:  5'- gACGACgCCCGcgggaaGCC-CGCCGcCGCCg- -3'
miRNA:   3'- -UGCUGgGGGU------UGGuGCGGCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 24502 0.66 0.732574
Target:  5'- cGCG-CCCgCCu-CCGCGCCGGCcgggGCCg- -3'
miRNA:   3'- -UGCuGGG-GGuuGGUGCGGCUG----UGGaa -5'
5127 3' -59.6 NC_001798.1 + 24730 0.74 0.313501
Target:  5'- cGCGGCCgCCCcGCCgcACGCCGACGCg-- -3'
miRNA:   3'- -UGCUGG-GGGuUGG--UGCGGCUGUGgaa -5'
5127 3' -59.6 NC_001798.1 + 24863 0.71 0.47744
Target:  5'- gUGGCCgCCGugCGCGCCGugAgCCUg -3'
miRNA:   3'- uGCUGGgGGUugGUGCGGCugU-GGAa -5'
5127 3' -59.6 NC_001798.1 + 24986 0.73 0.335169
Target:  5'- uGCG-CCCCCug-CugGCCGACACCg- -3'
miRNA:   3'- -UGCuGGGGGuugGugCGGCUGUGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.