miRNA display CGI


Results 21 - 40 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 3' -59.6 NC_001798.1 + 145408 0.68 0.643651
Target:  5'- aGCGcGCCCCCGcCCGgcCGCCGcGCGCCc- -3'
miRNA:   3'- -UGC-UGGGGGUuGGU--GCGGC-UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 143511 0.67 0.703378
Target:  5'- -gGACCCUCucuucccCCACGcCCGACAUCa- -3'
miRNA:   3'- ugCUGGGGGuu-----GGUGC-GGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 142484 0.67 0.683611
Target:  5'- gACGGCCCCCGagGCgGCGCgGgggugcgauaacGCACCc- -3'
miRNA:   3'- -UGCUGGGGGU--UGgUGCGgC------------UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 140228 0.66 0.751635
Target:  5'- cCGACCCagaCGGCCuCGCUGGagucCACCUUc -3'
miRNA:   3'- uGCUGGGg--GUUGGuGCGGCU----GUGGAA- -5'
5127 3' -59.6 NC_001798.1 + 137977 0.66 0.739287
Target:  5'- aGCG-CCCCCGccugGgCGCGCCGcagcucgcggucgcGCGCCUg -3'
miRNA:   3'- -UGCuGGGGGU----UgGUGCGGC--------------UGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 137931 0.69 0.573659
Target:  5'- cGCGccuCCCCCGGCCGC-CCGGucCGCCg- -3'
miRNA:   3'- -UGCu--GGGGGUUGGUGcGGCU--GUGGaa -5'
5127 3' -59.6 NC_001798.1 + 137360 0.68 0.603548
Target:  5'- uCGACgCCCCAGcCCugGuCCGGCGCa-- -3'
miRNA:   3'- uGCUG-GGGGUU-GGugC-GGCUGUGgaa -5'
5127 3' -59.6 NC_001798.1 + 136839 1.05 0.002419
Target:  5'- cACGACCCCCAACCACGCCGACACCUUg -3'
miRNA:   3'- -UGCUGGGGGUUGGUGCGGCUGUGGAA- -5'
5127 3' -59.6 NC_001798.1 + 135917 0.67 0.690552
Target:  5'- gACGACCCCCuGCCccaaacggccuuccGCGgaGGCGCCc- -3'
miRNA:   3'- -UGCUGGGGGuUGG--------------UGCggCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 135776 0.66 0.742151
Target:  5'- cCGGCCgCCGGCC-CGCCGGaggagGCCg- -3'
miRNA:   3'- uGCUGGgGGUUGGuGCGGCUg----UGGaa -5'
5127 3' -59.6 NC_001798.1 + 134651 0.69 0.563767
Target:  5'- uCGGCCUgCGGCCcCGCgGACACCc- -3'
miRNA:   3'- uGCUGGGgGUUGGuGCGgCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 134503 0.66 0.721944
Target:  5'- cGCGacaGCCCCCAgugcgcguccuccGCCucgcuCGCCGuCACCa- -3'
miRNA:   3'- -UGC---UGGGGGU-------------UGGu----GCGGCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 134155 0.68 0.602548
Target:  5'- uCGGCCCCCGggGCCGucgcggcCGCCcGCGCCg- -3'
miRNA:   3'- uGCUGGGGGU--UGGU-------GCGGcUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 134012 0.66 0.751635
Target:  5'- gGCuGCCCCC-GCgCACGCgCGACuGCCUc -3'
miRNA:   3'- -UGcUGGGGGuUG-GUGCG-GCUG-UGGAa -5'
5127 3' -59.6 NC_001798.1 + 131340 0.66 0.742151
Target:  5'- cGCG-CCCCgGGCgCgACGUCGGCGCCc- -3'
miRNA:   3'- -UGCuGGGGgUUG-G-UGCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 130454 0.73 0.373661
Target:  5'- -gGGCCCCCGGCCACuGCUGcucCACCa- -3'
miRNA:   3'- ugCUGGGGGUUGGUG-CGGCu--GUGGaa -5'
5127 3' -59.6 NC_001798.1 + 129718 0.69 0.553921
Target:  5'- -gGACCCCCcAUCGCGUC-ACACCa- -3'
miRNA:   3'- ugCUGGGGGuUGGUGCGGcUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 129540 0.67 0.693519
Target:  5'- cGCGGCCCU--GCUGCuGCCGACACa-- -3'
miRNA:   3'- -UGCUGGGGguUGGUG-CGGCUGUGgaa -5'
5127 3' -59.6 NC_001798.1 + 129370 0.67 0.713179
Target:  5'- -gGGCCCCCgGACC-CGCCaaGGCAUCg- -3'
miRNA:   3'- ugCUGGGGG-UUGGuGCGG--CUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 129105 0.67 0.673662
Target:  5'- gGCG-UCCCCGACCuugaGCGUCG-CACCa- -3'
miRNA:   3'- -UGCuGGGGGUUGG----UGCGGCuGUGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.