miRNA display CGI


Results 1 - 20 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 3' -59.6 NC_001798.1 + 153372 0.67 0.683611
Target:  5'- uCGGCCgCC-GCCACGC-GGCGCCg- -3'
miRNA:   3'- uGCUGGgGGuUGGUGCGgCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 153251 0.66 0.761018
Target:  5'- -gGACCCgCGcGCCGcCGCCGcCGCCUc -3'
miRNA:   3'- ugCUGGGgGU-UGGU-GCGGCuGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 151112 0.69 0.593556
Target:  5'- cCGACCCCC-GCC-CGCCcuCACCg- -3'
miRNA:   3'- uGCUGGGGGuUGGuGCGGcuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 150883 0.66 0.761018
Target:  5'- cGCGggucGCCCCCGcACCGcCGCCcccGCGCCg- -3'
miRNA:   3'- -UGC----UGGGGGU-UGGU-GCGGc--UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 150379 0.66 0.722914
Target:  5'- gGCGGCgcgggCCCGGCCGCGUCcgcgcucgcaGACACCa- -3'
miRNA:   3'- -UGCUGg----GGGUUGGUGCGG----------CUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 150257 0.66 0.761018
Target:  5'- cCGGCCcuCCCGACCcgcgcGCGUCGgucGCGCCUg -3'
miRNA:   3'- uGCUGG--GGGUUGG-----UGCGGC---UGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 147943 0.68 0.653674
Target:  5'- cACcGCCCCCA--CGCGCCGGuCACCc- -3'
miRNA:   3'- -UGcUGGGGGUugGUGCGGCU-GUGGaa -5'
5127 3' -59.6 NC_001798.1 + 147248 0.78 0.18652
Target:  5'- -gGGCCCCgGGCCGCGCCGGCGgCg- -3'
miRNA:   3'- ugCUGGGGgUUGGUGCGGCUGUgGaa -5'
5127 3' -59.6 NC_001798.1 + 147220 0.67 0.703378
Target:  5'- -gGGCCCCCGGCggaGCGCgGGgGCCc- -3'
miRNA:   3'- ugCUGGGGGUUGg--UGCGgCUgUGGaa -5'
5127 3' -59.6 NC_001798.1 + 147145 0.67 0.707306
Target:  5'- uCGAUUCCCGGCCGggggucccggguagcCGcCCGGCGCCg- -3'
miRNA:   3'- uGCUGGGGGUUGGU---------------GC-GGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 147065 0.68 0.643651
Target:  5'- -gGGCCCCCGcaccucggcgGCCGCccccuCCGGCGCCg- -3'
miRNA:   3'- ugCUGGGGGU----------UGGUGc----GGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 147014 0.7 0.515106
Target:  5'- -gGACCCCCGGgCGgGCCGGgGCUUg -3'
miRNA:   3'- ugCUGGGGGUUgGUgCGGCUgUGGAa -5'
5127 3' -59.6 NC_001798.1 + 146439 0.67 0.713179
Target:  5'- uGCGgaGCCCCCGgagcccgcgGCCGCaGCCGagcaGCGCCg- -3'
miRNA:   3'- -UGC--UGGGGGU---------UGGUG-CGGC----UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 145983 0.7 0.505571
Target:  5'- cGCaGCCUCCGGCagCACGCCGACcACCg- -3'
miRNA:   3'- -UGcUGGGGGUUG--GUGCGGCUG-UGGaa -5'
5127 3' -59.6 NC_001798.1 + 145875 0.7 0.524714
Target:  5'- cACGACacucuccccccaCCCCGACCGcCGCCG-CGCCc- -3'
miRNA:   3'- -UGCUG------------GGGGUUGGU-GCGGCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 145719 0.68 0.643651
Target:  5'- aGCGAgCCCCGGCCcCGgCCcGCGCCc- -3'
miRNA:   3'- -UGCUgGGGGUUGGuGC-GGcUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 145612 0.67 0.703378
Target:  5'- cGCGA-CCCCGACCcCGCCc-CACCg- -3'
miRNA:   3'- -UGCUgGGGGUUGGuGCGGcuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 145534 0.73 0.373661
Target:  5'- cGCGcGCCCCCGcccgGCCgcccgcgucGCGCCGGCGCCc- -3'
miRNA:   3'- -UGC-UGGGGGU----UGG---------UGCGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 145492 0.68 0.643651
Target:  5'- cGCGcGCCCCCGcCCGgcCGCCGcGCGCCc- -3'
miRNA:   3'- -UGC-UGGGGGUuGGU--GCGGC-UGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 145450 0.68 0.643651
Target:  5'- cGCGcGCCCCCGcCCGgcCGCCGcGCGCCc- -3'
miRNA:   3'- -UGC-UGGGGGUuGGU--GCGGC-UGUGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.