miRNA display CGI


Results 41 - 60 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 3' -59.6 NC_001798.1 + 126423 0.66 0.769369
Target:  5'- -aGGCCCCCGGCCcuGCGgCCaagcuaaGGCGCCc- -3'
miRNA:   3'- ugCUGGGGGUUGG--UGC-GG-------CUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 22810 0.66 0.770291
Target:  5'- gGCGGCCCCgGAUCuccggauccaGCCGACggACCg- -3'
miRNA:   3'- -UGCUGGGGgUUGGug--------CGGCUG--UGGaa -5'
5127 3' -59.6 NC_001798.1 + 115860 0.66 0.770291
Target:  5'- uUGGCCgCCAcGCCaugGCGCCGGCuACCa- -3'
miRNA:   3'- uGCUGGgGGU-UGG---UGCGGCUG-UGGaa -5'
5127 3' -59.6 NC_001798.1 + 127743 0.66 0.770291
Target:  5'- uGCGGCCgCCGcaaCAC-CCGGCGCCa- -3'
miRNA:   3'- -UGCUGGgGGUug-GUGcGGCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 97006 0.66 0.770291
Target:  5'- cCGGCCCgCC-GCC-CGCCGAUAgCUc -3'
miRNA:   3'- uGCUGGG-GGuUGGuGCGGCUGUgGAa -5'
5127 3' -59.6 NC_001798.1 + 23582 0.66 0.761018
Target:  5'- gGCGGCgCCCCGGCCGaGCCcGC-CCa- -3'
miRNA:   3'- -UGCUG-GGGGUUGGUgCGGcUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 21680 0.66 0.761018
Target:  5'- gUGGCCCCCuucGCgAUGCCGcCGCUg- -3'
miRNA:   3'- uGCUGGGGGu--UGgUGCGGCuGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 47659 0.66 0.751635
Target:  5'- gACGACUUCCGccGCgGCGCUGGC-CCg- -3'
miRNA:   3'- -UGCUGGGGGU--UGgUGCGGCUGuGGaa -5'
5127 3' -59.6 NC_001798.1 + 81635 0.66 0.751635
Target:  5'- cACGGCCCUC-GCCAC-CC-ACACCg- -3'
miRNA:   3'- -UGCUGGGGGuUGGUGcGGcUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 115532 0.66 0.751635
Target:  5'- cGCGGCCCcggCCGGCCccgGCGCgGACAUg-- -3'
miRNA:   3'- -UGCUGGG---GGUUGG---UGCGgCUGUGgaa -5'
5127 3' -59.6 NC_001798.1 + 140228 0.66 0.751635
Target:  5'- cCGACCCagaCGGCCuCGCUGGagucCACCUUc -3'
miRNA:   3'- uGCUGGGg--GUUGGuGCGGCU----GUGGAA- -5'
5127 3' -59.6 NC_001798.1 + 80635 0.66 0.751635
Target:  5'- cGCGACCCaCCGcACCccCGCCGcGCGCgUUa -3'
miRNA:   3'- -UGCUGGG-GGU-UGGu-GCGGC-UGUGgAA- -5'
5127 3' -59.6 NC_001798.1 + 96667 0.66 0.751635
Target:  5'- aGCGGCgCCaCGGCCGCGCUGgaGCGCg-- -3'
miRNA:   3'- -UGCUGgGG-GUUGGUGCGGC--UGUGgaa -5'
5127 3' -59.6 NC_001798.1 + 102402 0.66 0.751635
Target:  5'- gAUGGCCCCCAccAgCGCGgCGAUcuggGCCUc -3'
miRNA:   3'- -UGCUGGGGGU--UgGUGCgGCUG----UGGAa -5'
5127 3' -59.6 NC_001798.1 + 134012 0.66 0.751635
Target:  5'- gGCuGCCCCC-GCgCACGCgCGACuGCCUc -3'
miRNA:   3'- -UGcUGGGGGuUG-GUGCG-GCUG-UGGAa -5'
5127 3' -59.6 NC_001798.1 + 125753 0.66 0.751635
Target:  5'- cGCGGCCCugcgCCGACguUugGCCGagacGCACCUc -3'
miRNA:   3'- -UGCUGGG----GGUUG--GugCGGC----UGUGGAa -5'
5127 3' -59.6 NC_001798.1 + 62440 0.66 0.758214
Target:  5'- --aGCCCCCGgacgucgccgguggGCCGCGCgaCGGCGCCc- -3'
miRNA:   3'- ugcUGGGGGU--------------UGGUGCG--GCUGUGGaa -5'
5127 3' -59.6 NC_001798.1 + 3905 0.66 0.761018
Target:  5'- cCGGCCCCgGGCCAcggcucccCGCUGACguACCc- -3'
miRNA:   3'- uGCUGGGGgUUGGU--------GCGGCUG--UGGaa -5'
5127 3' -59.6 NC_001798.1 + 7182 0.66 0.761018
Target:  5'- -gGGCCCCCGcACCGgGgCGGCgACCa- -3'
miRNA:   3'- ugCUGGGGGU-UGGUgCgGCUG-UGGaa -5'
5127 3' -59.6 NC_001798.1 + 7780 0.66 0.761018
Target:  5'- cACGACCCaCCGcCCcCGCUGGCgggaGCCa- -3'
miRNA:   3'- -UGCUGGG-GGUuGGuGCGGCUG----UGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.