miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 5' -64.3 NC_001798.1 + 15259 0.67 0.489532
Target:  5'- uGGGGGgGUacgGGCGgugccccgGGUUCCGGGcguGGCg -3'
miRNA:   3'- gCUCCCgCA---CCGCa-------CCGAGGCCC---CUG- -5'
5127 5' -64.3 NC_001798.1 + 144561 0.67 0.488631
Target:  5'- gGGGGGCGUucgaaagGGCGaggacgGGCggCUGGGuGGCg -3'
miRNA:   3'- gCUCCCGCA-------CCGCa-----CCGa-GGCCC-CUG- -5'
5127 5' -64.3 NC_001798.1 + 26484 0.67 0.480566
Target:  5'- --uGGGCGUcGGCcgcgGGCcgCgCGGGGACg -3'
miRNA:   3'- gcuCCCGCA-CCGca--CCGa-G-GCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 74361 0.67 0.477893
Target:  5'- gGGcGGGCGccaUGGUGUuuuuugugcccuccGGC-CCGGGGGCc -3'
miRNA:   3'- gCU-CCCGC---ACCGCA--------------CCGaGGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 100984 0.67 0.475226
Target:  5'- cCGGGGGCGUgGGCGgggagggggaggaaGGCgcggagGGGGGCg -3'
miRNA:   3'- -GCUCCCGCA-CCGCa-------------CCGagg---CCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 138503 0.67 0.471682
Target:  5'- gGAGGGCGUGGCac-GCgacgaUCuCGGGGcACa -3'
miRNA:   3'- gCUCCCGCACCGcacCG-----AG-GCCCC-UG- -5'
5127 5' -64.3 NC_001798.1 + 146468 0.67 0.462881
Target:  5'- cCGAGcaGCGccGCG-GGCUCCGGGGcCg -3'
miRNA:   3'- -GCUCc-CGCacCGCaCCGAGGCCCCuG- -5'
5127 5' -64.3 NC_001798.1 + 135796 0.67 0.462881
Target:  5'- gGAGGcCGUGuGCGcGGC-CCGGGG-Cg -3'
miRNA:   3'- gCUCCcGCAC-CGCaCCGaGGCCCCuG- -5'
5127 5' -64.3 NC_001798.1 + 101872 0.67 0.462881
Target:  5'- gGGGGGUG-GGCGUGuGCg--GGGGAg -3'
miRNA:   3'- gCUCCCGCaCCGCAC-CGaggCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 26523 0.67 0.462881
Target:  5'- gCGGcGGGCGgcGGCGUGGagguggUGGGGACc -3'
miRNA:   3'- -GCU-CCCGCa-CCGCACCgag---GCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 2537 0.67 0.462881
Target:  5'- -cGGGGCGgggGGCGcGGCccCCGcGGGAg -3'
miRNA:   3'- gcUCCCGCa--CCGCaCCGa-GGC-CCCUg -5'
5127 5' -64.3 NC_001798.1 + 57 0.68 0.454168
Target:  5'- gGGGGGCGcgaaGGCGggcGGCggCGGcGGGCg -3'
miRNA:   3'- gCUCCCGCa---CCGCa--CCGagGCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 113750 0.68 0.454168
Target:  5'- aCGGGGGUGUGGCGggggGGUauuaaggCaGGGGCa -3'
miRNA:   3'- -GCUCCCGCACCGCa---CCGag-----GcCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 154395 0.68 0.454168
Target:  5'- gGGGGGCGcgaaGGCGggcGGCggCGGcGGGCg -3'
miRNA:   3'- gCUCCCGCa---CCGCa--CCGagGCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 150418 0.68 0.453301
Target:  5'- aCGGGGGCGgcGGCGgcgcggGGCggacUCCGgacgcgcGGGGCg -3'
miRNA:   3'- -GCUCCCGCa-CCGCa-----CCG----AGGC-------CCCUG- -5'
5127 5' -64.3 NC_001798.1 + 83853 0.68 0.445544
Target:  5'- cCGGGcGGCGcUGGCG-GGC-CCGaGGcGGCg -3'
miRNA:   3'- -GCUC-CCGC-ACCGCaCCGaGGC-CC-CUG- -5'
5127 5' -64.3 NC_001798.1 + 135471 0.68 0.445544
Target:  5'- uGGGGGCuGUucaaCGUGGaCcCCGGGGACg -3'
miRNA:   3'- gCUCCCG-CAcc--GCACC-GaGGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 36622 0.68 0.437013
Target:  5'- gCGGGGGCGcgcGGCGgccgGGC---GGGGGCg -3'
miRNA:   3'- -GCUCCCGCa--CCGCa---CCGaggCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 36580 0.68 0.437013
Target:  5'- gCGGGGGCGcgcGGCGgccgGGC---GGGGGCg -3'
miRNA:   3'- -GCUCCCGCa--CCGCa---CCGaggCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 36538 0.68 0.437013
Target:  5'- gCGGGGGCGcgcGGCGgccgGGC---GGGGGCg -3'
miRNA:   3'- -GCUCCCGCa--CCGCa---CCGaggCCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.