miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5128 5' -57.2 NC_001798.1 + 38708 0.67 0.824236
Target:  5'- aCCCGCCAUgCAggCCCCCGGGAu----- -3'
miRNA:   3'- -GGGUGGUG-GUa-GGGGGCUCUcuacug -5'
5128 5' -57.2 NC_001798.1 + 90698 0.67 0.824236
Target:  5'- gCCGCCGCCAggCgCUCGcAGAGAUcGCg -3'
miRNA:   3'- gGGUGGUGGUa-GgGGGC-UCUCUAcUG- -5'
5128 5' -57.2 NC_001798.1 + 131329 0.67 0.848533
Target:  5'- aCCaCGCCGCCcgCgCCCCGGGcgc-GACg -3'
miRNA:   3'- -GG-GUGGUGGuaG-GGGGCUCucuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 3865 0.67 0.848533
Target:  5'- gCCCAgcCCGCCGUacagcacgcgCCCCGGGGGcgGGg -3'
miRNA:   3'- -GGGU--GGUGGUAg---------GGGGCUCUCuaCUg -5'
5128 5' -57.2 NC_001798.1 + 57903 0.67 0.84775
Target:  5'- cCCCGCCcCCAuuuccuuccccccUCCCCCcGGGGAUcGGa -3'
miRNA:   3'- -GGGUGGuGGU-------------AGGGGGcUCUCUA-CUg -5'
5128 5' -57.2 NC_001798.1 + 83763 0.67 0.840615
Target:  5'- cCCCGCCGCCAgcaacagaagCgCCGGGGGGcccgGACg -3'
miRNA:   3'- -GGGUGGUGGUag--------GgGGCUCUCUa---CUG- -5'
5128 5' -57.2 NC_001798.1 + 22630 0.67 0.832514
Target:  5'- cCCCACUGCCG-CCCCUGA-AGAaGAa -3'
miRNA:   3'- -GGGUGGUGGUaGGGGGCUcUCUaCUg -5'
5128 5' -57.2 NC_001798.1 + 2163 0.67 0.824236
Target:  5'- aCCACgCGCaCGUCCUCCGGGucg-GGCa -3'
miRNA:   3'- gGGUG-GUG-GUAGGGGGCUCucuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 147470 0.68 0.780468
Target:  5'- gCCGCgugaGCCGUCCgCCGGGGGAcccaGGCu -3'
miRNA:   3'- gGGUGg---UGGUAGGgGGCUCUCUa---CUG- -5'
5128 5' -57.2 NC_001798.1 + 22872 0.68 0.780468
Target:  5'- cCCCGCCGCgCGg--CCCGGGuucGGGUGGCa -3'
miRNA:   3'- -GGGUGGUG-GUaggGGGCUC---UCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 382 0.68 0.784102
Target:  5'- cCCCGCCACCcccucccuccccuccAUCCCgCCGAGcucgcGGCa -3'
miRNA:   3'- -GGGUGGUGG---------------UAGGG-GGCUCucua-CUG- -5'
5128 5' -57.2 NC_001798.1 + 135775 0.68 0.789513
Target:  5'- gCCgGCCGCCggCCCgCCG-GAGGaGGCc -3'
miRNA:   3'- -GGgUGGUGGuaGGG-GGCuCUCUaCUG- -5'
5128 5' -57.2 NC_001798.1 + 320 0.68 0.789513
Target:  5'- aCCACCGCUcgCCCUCGcAGAccaGACa -3'
miRNA:   3'- gGGUGGUGGuaGGGGGC-UCUcuaCUG- -5'
5128 5' -57.2 NC_001798.1 + 53335 0.68 0.789513
Target:  5'- aCCAUaaCACCGUCCCC-GAGAGccUGAUc -3'
miRNA:   3'- gGGUG--GUGGUAGGGGgCUCUCu-ACUG- -5'
5128 5' -57.2 NC_001798.1 + 145898 0.68 0.789513
Target:  5'- aCCGCCGCCGcgcCCCaCCGGcGGGAUcGCg -3'
miRNA:   3'- gGGUGGUGGUa--GGG-GGCU-CUCUAcUG- -5'
5128 5' -57.2 NC_001798.1 + 36003 0.68 0.793092
Target:  5'- uUCACCACCAcgCCCCCcaccGcgccuuggcuguuugGGGGGUGGCg -3'
miRNA:   3'- gGGUGGUGGUa-GGGGG----C---------------UCUCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 85441 0.68 0.79842
Target:  5'- gCCUACCGCCucUCgCCCC-AGuGGGUGGCc -3'
miRNA:   3'- -GGGUGGUGGu-AG-GGGGcUC-UCUACUG- -5'
5128 5' -57.2 NC_001798.1 + 154338 0.68 0.79842
Target:  5'- uCCCGCCccGCCucuuuUCCCCCGGG-GAg--- -3'
miRNA:   3'- -GGGUGG--UGGu----AGGGGGCUCuCUacug -5'
5128 5' -57.2 NC_001798.1 + 1 0.68 0.807181
Target:  5'- CCCGCCccGCCucuuuUCCCCCGGG-GAg--- -3'
miRNA:   3'- GGGUGG--UGGu----AGGGGGCUCuCUacug -5'
5128 5' -57.2 NC_001798.1 + 134919 0.68 0.780468
Target:  5'- gCCGCCGCCG-CCgCCGAGucggcgcGUGACc -3'
miRNA:   3'- gGGUGGUGGUaGGgGGCUCuc-----UACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.